BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0180.0007.p
         (46 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310920|ref|YP_003775012.1| integral membrane protein [Herb...    73   5e-15

>gi|300310920|ref|YP_003775012.1| integral membrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score = 72.8 bits (177), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 43/46 (93%), Gaps = 1/46 (2%)

Query: 1   VIYSSGRVSGKIRYGKLVIEEGGQLSGDVQVGGSAEQRELLQAKTA 46
           VIY+SG+V+GKIRYGKLVIEEGGQL+GD+QVGG  EQ+ELLQ KTA
Sbjct: 134 VIYASGKVTGKIRYGKLVIEEGGQLAGDLQVGGGHEQKELLQ-KTA 178


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.133    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 144,977
Number of extensions: 3843
Number of successful extensions: 16
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 46
Length of database: 1,619,870
Length adjustment: 20
Effective length of query: 26
Effective length of database: 1,525,170
Effective search space: 39654420
Effective search space used: 39654420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 123 (52.0 bits)