BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0180.0006.p
         (313 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310922|ref|YP_003775014.1| formyltetrahydrofolate deformyl...   471   e-134
gi|300310510|ref|YP_003774602.1| phosphoribosylglycinamide formy...    92   4e-20
gi|300313417|ref|YP_003777509.1| enoyl-CoA hydratase II protein ...    64   2e-11

>gi|300310922|ref|YP_003775014.1| formyltetrahydrofolate deformylase
           [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score =  471 bits (1212), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/307 (76%), Positives = 249/307 (81%), Gaps = 34/307 (11%)

Query: 1   MTHPEYILTISCLDQRGIVHRVSGFLADHGCNIIDSAQFGDAQSKLFFMRVHFASAPTKG 60
           M HPEYILT+SCLDQRGIVHRVSGFLADHGCNIIDSAQFGDAQSKLFFMRVHF+S     
Sbjct: 1   MAHPEYILTLSCLDQRGIVHRVSGFLADHGCNIIDSAQFGDAQSKLFFMRVHFSS----- 55

Query: 61  LAHTKAAIYQSPANTLTEQLALERDSMRALXEQLALERDSMLFALLGASLNMDWQLHDAA 120
                            E  ++   ++RA             F +LG +L M+WQLHDA 
Sbjct: 56  -----------------EDASVSDAALRAD------------FGVLGDALQMNWQLHDAG 86

Query: 121 QKPRVLLMVSKIGHCLNDLLFRYKSGLLPVEIPAIVSNHTDFYQLAASYNIPFHHLPLAA 180
           +KPRV+LMVSKIGHCLNDLLFRYKSGLLPVEIPAIVSNHTDFYQLAASYNIPFHHLPLA 
Sbjct: 87  KKPRVMLMVSKIGHCLNDLLFRYKSGLLPVEIPAIVSNHTDFYQLAASYNIPFHHLPLAT 146

Query: 181 GASEEAKLAQEARILEIVEHNQIDLVVLARYMQILSPSMCAALKGRAINIHHSFLPSFKG 240
           GA  E K AQE RI+EIVE NQIDLVVLARYMQILSP MC AL+GRAINIHHSFLPSFKG
Sbjct: 147 GAPMEVKRAQEQRIMEIVEANQIDLVVLARYMQILSPEMCEALRGRAINIHHSFLPSFKG 206

Query: 241 AKPYYQAHDRGVKLIGATAHFVTSDLDEGPIIEQGVERVDHSMGPETLTAIGRDIESVVL 300
           AKPYYQAHDRGVKLIGATAHFVT DLDEGPIIEQGVERVDHSMGP+TLTAIGRDIE VVL
Sbjct: 207 AKPYYQAHDRGVKLIGATAHFVTGDLDEGPIIEQGVERVDHSMGPDTLTAIGRDIECVVL 266

Query: 301 ARAWKSF 307
           ARA K F
Sbjct: 267 ARAVKWF 273


>gi|300310510|ref|YP_003774602.1| phosphoribosylglycinamide
           formyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score = 92.4 bits (228), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 5/186 (2%)

Query: 125 VLLMVSKIGHCLNDLLFRYKSGLLPVEIPAIVSNHTDFYQLA--ASYNIPFHHLPLAAGA 182
           +++++S  G  +  ++   ++   P +I A++SN  D   LA  A   IP   +P    +
Sbjct: 4   IVILISGRGSNMEAIVRAAQAEQWPAKIAAVISNRADASGLAFAAQRGIPTAVIPSRDYS 63

Query: 183 SEEAKLAQEARILEIVEHNQIDLVVLARYMQILSPSMCAALKGRAINIHHSFLPSFKGAK 242
           + E     ++ + + ++    DLVVLA +M+IL+       +GR +NIH S LPSF G  
Sbjct: 64  TREQF---DSALRDKIDTFAPDLVVLAGFMRILTAPFVEHYQGRMLNIHPSLLPSFPGLA 120

Query: 243 PYYQAHDRGVKLIGATAHFVTSDLDEGPIIEQGVERVDHSMGPETLTAIGRDIESVVLAR 302
            + QA   GVKL GAT HFVT DLD GPI+ Q    V      E L     + E V+  R
Sbjct: 121 THRQALAAGVKLHGATVHFVTPDLDHGPIVAQAAVPVQEEDSEEALAERVLEQEHVIYPR 180

Query: 303 AWKSFL 308
           A + F+
Sbjct: 181 AVRWFI 186


>gi|300313417|ref|YP_003777509.1| enoyl-CoA hydratase II protein
           [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 34/42 (80%)

Query: 49  MRVHFASAPTKGLAHTKAAIYQSPANTLTEQLALERDSMRAL 90
           M  HFA APTKGLA TKA +Y SPA+TL EQL LERD+MRAL
Sbjct: 198 MAAHFARAPTKGLAATKATLYASPAHTLPEQLDLERDTMRAL 239


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 947,223
Number of extensions: 38016
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 4
Length of query: 313
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,217,395
Effective search space: 277566060
Effective search space used: 277566060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 130 (54.7 bits)