BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0180.0005.p
         (270 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312326|ref|YP_003776418.1| methyl-accepting chemotaxis pro...   221   3e-59

>gi|300312326|ref|YP_003776418.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 541

 Score =  221 bits (564), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/188 (59%), Positives = 146/188 (77%), Gaps = 1/188 (0%)

Query: 1   MKNWTIKQRILGSFAVILILMVIMAGIAYTRLAKIDDEATSLRQDSTPGLYYSTMINAAW 60
           MKNWTIKQRILGSFA+IL+LM +MAGI+   L +I++ AT+LRQDSTPGLYYSTMINAAW
Sbjct: 1   MKNWTIKQRILGSFALILLLMALMAGISAVNLGRIENGATALRQDSTPGLYYSTMINAAW 60

Query: 61  YENLLLGQQISQVDGTDATRQSDIELLRANAERLNHLQEEYEKTIFSARDRALFDQFKQA 120
           YENLL+ QQI+Q+D  +A RQ+D+ LLR N ERL+ LQE+Y+KTIFS  DR LFDQFK+ 
Sbjct: 61  YENLLMSQQIAQIDTNEAERQADLALLRRNGERLDRLQEDYDKTIFSDSDRKLFDQFKET 120

Query: 121 RMAYRQIQQDILRMDLSSPNPAVYKIVSDQLRPAWRTGYALTQKMVEVNKAISNDSAQXA 180
           R  YR +  ++L+MD S   P + K+ ++Q+RP WR GY LTQ+MV+ NK+I++D+A   
Sbjct: 121 RQKYRAMISEVLKMDFSQRAP-IDKMFNEQIRPQWRQGYQLTQRMVDTNKSIADDAASRI 179

Query: 181 RDLCDRAR 188
            D    A+
Sbjct: 180 NDAVTSAQ 187


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 721,828
Number of extensions: 25497
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,222,130
Effective search space: 227316180
Effective search space used: 227316180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)