BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0180.0004.p
         (99 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312326|ref|YP_003776418.1| methyl-accepting chemotaxis pro...   167   1e-43

>gi|300312326|ref|YP_003776418.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 541

 Score =  167 bits (424), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/97 (87%), Positives = 92/97 (94%)

Query: 1   MDKFSDQVRRGMAEVQQVGTQLSQIIAQVQALAPRFQVVNEGMQTQANSAEQINQALLQL 60
           MDKFSDQVRRGM +VQ  G+QLSQIIAQVQALAPRFQ+VNEGMQ QANSAEQINQAL+QL
Sbjct: 443 MDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPRFQIVNEGMQAQANSAEQINQALVQL 502

Query: 61  SEAAQQTVESLQQSSQAIDELNLVSNGLRNGVSRFKV 97
           SEAAQQTVESLQQSSQAI+EL++VSN LRNGVSRFKV
Sbjct: 503 SEAAQQTVESLQQSSQAIEELHVVSNELRNGVSRFKV 539


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.122    0.301 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 183,544
Number of extensions: 3979
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 3
Length of query: 99
Length of database: 1,619,870
Length adjustment: 68
Effective length of query: 31
Effective length of database: 1,297,890
Effective search space: 40234590
Effective search space used: 40234590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)