BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0180.0003.p
         (158 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312325|ref|YP_003776417.1| chemotaxis signal transduction ...   166   1e-42

>gi|300312325|ref|YP_003776417.1| chemotaxis signal transduction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 158

 Score =  166 bits (419), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/154 (54%), Positives = 111/154 (72%), Gaps = 5/154 (3%)

Query: 2   LFLIFQIGNERYALDAAEVAVVLPPAPCKQVPEAPPWVRGIFSHQGRNVPVLDVSMLALG 61
           LFL+F +G +RYAL  AEVAVVLP  PCKQ+P AP WV G+  ++GR+VPV+D+S   LG
Sbjct: 8   LFLLFSLGADRYALPVAEVAVVLPLTPCKQLPGAPAWVAGLLPYEGRHVPVIDLSQRTLG 67

Query: 62  TPAAARLSTRMVLVHYRPEGRRNTSGEPQLLGLVVERATDTLRCEAADFTGSGLAHDNAR 121
            PAA R+STR+VLVH      R+ +GEP LLGL++E+ATDTLRC    F  + +AHD   
Sbjct: 68  RPAAQRVSTRLVLVH-----DRSPAGEPALLGLILEQATDTLRCAEQQFVRATVAHDETP 122

Query: 122 YLGPVMRHGDGLIQWVRVADMLDAEVQALLFPEE 155
           YLGPVM +  GL+Q V+V+ +LDA  +A+L+  E
Sbjct: 123 YLGPVMPYQGGLLQRVQVSALLDAATRAVLYARE 156


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 499,139
Number of extensions: 20737
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,250,540
Effective search space: 100043200
Effective search space used: 100043200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)