BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0180.0002.p (337 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312324|ref|YP_003776416.1| methyltransferase of chemotaxis... 305 2e-84 gi|300309960|ref|YP_003774052.1| chemotaxis protein methyltransf... 94 2e-20 gi|300311031|ref|YP_003775123.1| chemotaxis protein methyltransf... 82 7e-17 gi|300311336|ref|YP_003775428.1| chemotaxis protein methyltransf... 76 4e-15 gi|300312676|ref|YP_003776768.1| protein-glutamate methyltransfe... 59 7e-10 >gi|300312324|ref|YP_003776416.1| methyltransferase of chemotaxis proteins protein [Herbaspirillum seropedicae SmR1] Length = 433 Score = 305 bits (782), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 164/266 (61%), Positives = 198/266 (74%), Gaps = 5/266 (1%) Query: 15 AIEPIAAMLKQHMGLDIASVGSTLIERGVRERMNVLGQADMTGYLHILQSGVGELQELIE 74 +++ IA LK MGLD+A+VG++LIER VRERM VL D YL +L S ELQ LIE Sbjct: 3 SLQAIADKLKAAMGLDMATVGASLIERVVRERMAVLEMEDDALYLSLLLSSAAELQALIE 62 Query: 75 LVVVPETWFFRDREAILAVARLARDKIIRSPNAIVRILSLPCSTGEEPYSIAMALLDAGV 134 L VVPETWFFRDREAILAVARLA DK+ P A++RILSLPCSTGEEPYS+AMALLDAG+ Sbjct: 63 LAVVPETWFFRDREAILAVARLASDKLAAQPAAVIRILSLPCSTGEEPYSLAMALLDAGL 122 Query: 135 PPAQFRIDGIDICHRSLAAAQRAIYGRNSFRGKQLAYRERYFSDGHEGAGQPDWALAGDV 194 P QF ID DI RSL A +YGRNSFRG++LA+R+R+F D +G W L + Sbjct: 123 TPGQFVIDAYDIRTRSLEIAAAGLYGRNSFRGQELAFRDRHF-DLEQG----QWRLHERI 177 Query: 195 RQQVAFRFGNMLADDFMRNEAPYDFIFCRNVLIYFDRDVQMQAVQVLERLLEHDGCIFVG 254 R QV F GN+LA DF+R+ PYDFIFCRNVLIYF+RDVQ Q VQ+L +++ D IFVG Sbjct: 178 RSQVRFAPGNLLAPDFLRHSQPYDFIFCRNVLIYFERDVQRQVVQLLASVMKPDALIFVG 237 Query: 255 PAEAGLLLKPHVESIGIPLSFGFRRK 280 PAE G+LL P +ES GI L+FGFR++ Sbjct: 238 PAEGGILLGPTMESAGIALAFGFRKR 263 >gi|300309960|ref|YP_003774052.1| chemotaxis protein methyltransferase [Herbaspirillum seropedicae SmR1] Length = 277 Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 122/241 (50%), Gaps = 11/241 (4%) Query: 22 MLKQHMGLDIASVGSTLIERGVRERMNVLGQADMTGYLHILQS--GVGELQELIELVVVP 79 + KQ +GL + L++ + R+N LG + Y ++ S G E Q I+L+ Sbjct: 24 LFKQQIGLHLPLSKKALLQSRLAGRLNELGLRHLGQYHALISSEAGAQERQRAIDLITTN 83 Query: 80 ETWFFRDREAILAVARLARDKIIRSPNAIVRILSLPCSTGEEPYSIAMALLDAGVPPAQF 139 ET+FFR+ V ++ + P +RI S +TGEE Y++AM LLD P A + Sbjct: 84 ETYFFREPGHFDFVVGQWLPQLAQQPQ--LRIWSAASATGEEAYTLAM-LLDHHRPGASW 140 Query: 140 RIDGIDICHRSLAAAQRAIYGRNSFRGKQL--AYRERYFSDGHEGAGQPDWALAGDVRQQ 197 + DI R L A+RA+Y RG+ + AY RY G G + + + D+R + Sbjct: 141 SVFASDISTRVLRFARRALY--PMVRGQNIPRAYLRRYCLMG-VGEYEGHFLVQADLRAK 197 Query: 198 VAFRFGNMLADDFMRNEAPYDFIFCRNVLIYFDRDVQMQAVQVLERLLEHDGCIFVGPAE 257 V F N+ D ++ YD IF RNV+IYFD + ++Q ++ + L G + VG +E Sbjct: 198 VQFAQRNLTRLD-EHDDGQYDLIFLRNVIIYFDCETKLQVLRDVIARLRPGGYLVVGHSE 256 Query: 258 A 258 + Sbjct: 257 S 257 >gi|300311031|ref|YP_003775123.1| chemotaxis protein methyltransferase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 13/238 (5%) Query: 28 GLDIASVGSTLIERGVRERMNVLGQADMTGYLHIL--QSGVGELQELIELVVVPETWFFR 85 G+ + +++ + ER+ G Y +L ++ ELQ L L+ V ET+F R Sbjct: 23 GISFEATKRYFVDKRLIERIEATGSGSFRHYFSLLRFEADGKELQLLTNLMTVNETYFLR 82 Query: 86 DREAILAVARLARDKIIRS--PNAIVRILSLPCSTGEEPYSIAMALLDA--GVPPAQFRI 141 + + +I R+ A +RI +PCS+GEE Y++AM L++ G+ I Sbjct: 83 EEYQFQCLVNSMLPEITRNRRSTAPIRIWCIPCSSGEEAYTLAMYLMERWPGIDQWDVEI 142 Query: 142 DGIDICHRSLAAAQRAIYGRNSFRGKQLAYRERYF-SDGHEGAGQPDWALAGDVRQQVAF 200 DI L AQ Y S + + +YF G E + + +R V F Sbjct: 143 ISSDIDTGVLRKAQLGRYSARSVQHVPADWMSKYFLRQGDE------YQICDALRGAVEF 196 Query: 201 RFGNMLADDFMRNEAPYDFIFCRNVLIYFDRDVQMQAVQVLERLLEHDGCIFVGPAEA 258 N+ + +D IFCRN+LIYFD + +A + L +G I +G +E+ Sbjct: 197 TRVNLAKSQDTKAYRNFDVIFCRNLLIYFDDVSRKEAAETFYEALNLNGFICLGHSES 254 >gi|300311336|ref|YP_003775428.1| chemotaxis protein methyltransferase [Herbaspirillum seropedicae SmR1] Length = 290 Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/255 (25%), Positives = 109/255 (42%), Gaps = 20/255 (7%) Query: 16 IEPIAAMLKQHMGLDIASVGSTLIERGVRERMNVLGQADMTGYLHILQSG--VGELQELI 73 E + ++ Q G+ +A ++ + R+ G YL +L+ E + Sbjct: 23 FERVRGLIYQRAGIALADSKQEMVYSRLARRLRATGITSFQQYLDMLERTHDSEEWEAFT 82 Query: 74 ELVVVPETWFFRDREAILAVARLARDKIIRSPNAIVRILSLPCSTGEEPYSIAMALLDAG 133 + T FFR+ +A K ++ P I STGEEPY+IAM +A Sbjct: 83 NALTTNLTSFFREAHHFPILADFL--KTLKEP---ATIWCSAASTGEEPYTIAMTACEAY 137 Query: 134 ---VPPAQFRIDGIDICHRSLAAAQRAIYGRNSFRGKQLAYRERYFSDG---HEGAGQPD 187 PP Q I DI LA +Y +++F G HEG + Sbjct: 138 GSLTPPVQ--IVATDIDTNVLATGSNGVYPMERIEKMSPERVKKFFLRGKGSHEGYVR-- 193 Query: 188 WALAGDVRQQVAFRFGNMLADDFMRNEAPYDFIFCRNVLIYFDRDVQMQAVQVLERLLEH 247 + ++R+ + F+ N+LAD + + +D IFCRNV+IYFD+ Q + + L++ Sbjct: 194 --VRPELRKLITFKQLNLLADGWPLS-GQFDVIFCRNVMIYFDKPTQSKILSRFVPLMKP 250 Query: 248 DGCIFVGPAEAGLLL 262 +F G +E L + Sbjct: 251 HALLFAGHSENFLYV 265 >gi|300312676|ref|YP_003776768.1| protein-glutamate methyltransferase chemotaxis response regulator protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 58.5 bits (140), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 35/203 (17%) Query: 72 LIELVVVPETWFFRDREAILAVARLARDKII----RSPNAIVRILSLPCSTGEEPYSIAM 127 L+E + V + FRD LA+ R+K++ P+ ++I CS+GEE YS+A+ Sbjct: 74 LMEYLTVQVSEMFRDPSYFLAL----REKVVPLLRTYPS--LKIWVAGCSSGEEVYSLAI 127 Query: 128 ALLDAGVPPAQFRIDGIDICHRSLAAAQRAIYGRNSFRGKQLAYRERYFSDGHEGAGQ-- 185 L + G+ I DI +L A+ +Y G F++ H+ +G Sbjct: 128 LLREEGLLERSI-IYATDINQSALKKAEAGVYDLERIAG---------FTNNHQKSGART 177 Query: 186 --PDWALAG--------DVRQQVAFRFGNMLADDFMRNEAPYDFIFCRNVLIYFDRDVQM 235 D+ A +R+ V F ++ D A + CRNVLIYF+R +Q Sbjct: 178 SLSDYYTAAYGAVVFDKSLRKNVVFSDHSLATDSVF---AEMHLVSCRNVLIYFNRQLQE 234 Query: 236 QAVQVLERLLEHDGCIFVGPAEA 258 +A+ + L G + +G E+ Sbjct: 235 RALGLFRESLVRKGFLGLGSKES 257 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.140 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,054,007 Number of extensions: 46443 Number of successful extensions: 148 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 5 Length of query: 337 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 251 Effective length of database: 1,212,660 Effective search space: 304377660 Effective search space used: 304377660 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 131 (55.1 bits)