BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0179.0014.p
         (163 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310202|ref|YP_003774294.1| DNA primase [Herbaspirillum ser...   159   1e-40

>gi|300310202|ref|YP_003774294.1| DNA primase [Herbaspirillum
           seropedicae SmR1]
          Length = 598

 Score =  159 bits (401), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 73/97 (75%), Positives = 87/97 (89%)

Query: 1   LPKEHDPDSYVREKGAEAFEQQIKEAMPLSQFLIKEVVGDNDMTTPEGRARAQFDAKPML 60
           LPKEHDPDSYVRE GA AFE+QI+EA+PLSQFL++E++G+ND+ TPEGRA AQF AKP+L
Sbjct: 341 LPKEHDPDSYVREMGAPAFEEQIREALPLSQFLLREIIGENDLRTPEGRAHAQFAAKPLL 400

Query: 61  QALPPSSLRLQIVRSLAQVTQTTPAEIEALFELSNPV 97
           QALP S+LRLQIVRS+AQ TQ+TPAE+E LFEL  PV
Sbjct: 401 QALPASALRLQIVRSVAQATQSTPAELEVLFELEKPV 437



 Score = 60.8 bits (146), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 39/54 (72%)

Query: 107 VRQEMAGAVRQMKMRQVEDEMTQLSIAGLRDEAAQSRYRELMQRKEHLKRLTGA 160
           VR EM GA+RQ ++R +++EM  L  + LR E  ++RYRELMQRKE LKR  GA
Sbjct: 540 VRAEMGGAIRQARIRALDEEMQMLVTSNLRTEEDRNRYRELMQRKEWLKRQAGA 593


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 420,666
Number of extensions: 13310
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 163
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 85
Effective length of database: 1,250,540
Effective search space: 106295900
Effective search space used: 106295900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)