BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0079.p
         (102 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309979|ref|YP_003774071.1| hypothetical protein Hsero_0644...   105   1e-24

>gi|300309979|ref|YP_003774071.1| hypothetical protein Hsero_0644
           [Herbaspirillum seropedicae SmR1]
          Length = 94

 Score =  105 bits (261), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/88 (57%), Positives = 68/88 (77%), Gaps = 1/88 (1%)

Query: 16  PSSPPSYWDKTRRLTMALLGLWFVLTFGAVFFARELDRVNLFGWPLSFYMAAQGIMLVYL 75
           PS P + W +TRR+T  LL LWF+ TF  ++FARELDRV+LFGWP+SFYMAAQG+ML+YL
Sbjct: 7   PSDPGNQWHRTRRMTAWLLALWFLATFFFIYFARELDRVHLFGWPISFYMAAQGMMLIYL 66

Query: 76  AIVVVYTIWMGRAQRQL-QQTGEHTHGE 102
           AIVV+Y   M R ++ + ++ GE  +GE
Sbjct: 67  AIVVIYLRRMRRIEQLVRREQGESGNGE 94


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 264,213
Number of extensions: 8161
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 31
Effective length of database: 1,283,685
Effective search space: 39794235
Effective search space used: 39794235
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 123 (52.0 bits)