BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0077.p
         (148 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309978|ref|YP_003774070.1| membrane transport protein [Her...   227   4e-61

>gi|300309978|ref|YP_003774070.1| membrane transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 683

 Score =  227 bits (578), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 129/148 (87%), Positives = 141/148 (95%)

Query: 1   VYYKVIDPAASTQKRVTISKLLLLVVALLAAYAASLKPGDILSMVGVAFSLAASTLFPAL 60
           VYYKV+DP+ASTQKRVTISKLLLLVVALLAAYAASLKPGDILSMVG AFSLAASTLFPAL
Sbjct: 536 VYYKVVDPSASTQKRVTISKLLLLVVALLAAYAASLKPGDILSMVGAAFSLAASTLFPAL 595

Query: 61  VFGIFWKRANQPGAIAGIVAGFVMCVYYMMTTHPAFGGNAANQWFHIAPISAGLFGVPVG 120
           V G+FWKRANQ GAIAGI+ GF+MCVYYM+ T+P+FGG+AA QWFHIAPISAG+FGVPVG
Sbjct: 596 VLGVFWKRANQAGAIAGILCGFLMCVYYMLHTNPSFGGSAAGQWFHIAPISAGIFGVPVG 655

Query: 121 IAALVIVSLLTPPPDERTIALIDHIRTP 148
           +AA+VIVSLLTPPPDE TIALIDHIRTP
Sbjct: 656 MAAMVIVSLLTPPPDEATIALIDHIRTP 683


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 438,025
Number of extensions: 16898
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,255,275
Effective search space: 89124525
Effective search space used: 89124525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 126 (53.1 bits)