BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0074.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309976|ref|YP_003774068.1| hypothetical protein Hsero_0641...   288   3e-79
gi|300309970|ref|YP_003774062.1| hypothetical protein Hsero_0635...    57   1e-09

>gi|300309976|ref|YP_003774068.1| hypothetical protein Hsero_0641
           [Herbaspirillum seropedicae SmR1]
          Length = 833

 Score =  288 bits (737), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 136/195 (69%), Positives = 162/195 (83%), Gaps = 1/195 (0%)

Query: 42  LIRTTVDVSSHAGENLFWMGRYAERTDNLARLLRTTLQCTIEPQSDNRAILRSVSEICIR 101
           LI+ TVDVSSH+GENLFWMGRY+ER  NLARLLRTTLQ T++ Q+++R +L SVS IC +
Sbjct: 506 LIKGTVDVSSHSGENLFWMGRYSERVKNLARLLRTTLQYTMDGQTESRGMLGSVSWICSQ 565

Query: 102 LGILMPKSEQAHPTITALQQSLQAAIADPSATVSISTHLRHLHHSGYQVREHLSLDNWHA 161
           LG+ MPKS+   PTIT LQQSLQAA+ DPSA VS++T LR L ++ YQVREHLSLDNWHA
Sbjct: 566 LGVQMPKSD-PRPTITGLQQSLQAAVVDPSAPVSVATQLRQLANAAYQVREHLSLDNWHA 624

Query: 162 LNRMPPLVQEKINSPTAMLHVLNNVIQGCSGLAGHALDDMTRDEGWQFLMIGRHIERMVH 221
           L +MP +VQE+IN+P A  HVL NVI  CSGLAGHALDDMTRD GWQFLM+GRHIERM +
Sbjct: 625 LTKMPAMVQERINTPAAAQHVLGNVIDACSGLAGHALDDMTRDAGWQFLMVGRHIERMAN 684

Query: 222 LAALFDQFMQLEPAR 236
           +AALFD F++L P R
Sbjct: 685 MAALFDNFLRLPPQR 699


>gi|300309970|ref|YP_003774062.1| hypothetical protein Hsero_0635
           [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score = 57.0 bits (136), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 24/189 (12%)

Query: 51  SHAGENLFWMGRYAERTDNLARLLRTTLQCTIEPQSDN------RAILRSVSEICIRLGI 104
           S   ++LFWM RY ER +N AR+L   +Q  + PQS +      RA+L  +SE       
Sbjct: 3   SRTADHLFWMARYTERAENTARMLDVHVQTALLPQSTDDAEQGWRAVL-GISE------- 54

Query: 105 LMPKSEQAHPTITALQQSLQAAIADPSATVSISTHLRHLHHSGYQVREHLSLDNWHALN- 163
           L+    Q +  +T  +  +   + DP+   SI++ LR    +   VR  L+ + W   N 
Sbjct: 55  LLYGYNQKYDKLTQ-KDVIDFMVRDPNNPSSIASCLRQARENARAVRGALTTEAWEIQNA 113

Query: 164 ---RMPPLVQEKI--NSPTAMLHVLNNVIQGCSGLAGHALDDMTRDEGWQFLMIGRHIER 218
              +M   +Q      +P+     + +      G+    +  M  DE + F+ +G  +ER
Sbjct: 114 TWIKMQSYLQTNALEQNPSDFFEWVKHRSHLSRGV---TIGTMLEDEAFHFIRLGTFLER 170

Query: 219 MVHLAALFD 227
             + A + D
Sbjct: 171 ADNTARIID 179


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.130    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 736,390
Number of extensions: 27238
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 2
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)