BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0073.p
         (396 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309976|ref|YP_003774068.1| hypothetical protein Hsero_0641...   585   e-168
gi|300309971|ref|YP_003774063.1| hypothetical protein Hsero_0636...   238   7e-64

>gi|300309976|ref|YP_003774068.1| hypothetical protein Hsero_0641
           [Herbaspirillum seropedicae SmR1]
          Length = 833

 Score =  585 bits (1508), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 279/364 (76%), Positives = 311/364 (85%)

Query: 27  RARLLNAVLGDLYGEQHLLAEGLLPPALVFGQHGYLWPCRDVRPPGGVHLHLYAIDLARS 86
           RARL+N +L D+YG Q L+AEGLLPPALVFGQHGYL PC   +PPGGVHLH YAIDLARS
Sbjct: 100 RARLMNGLLSDIYGPQTLIAEGLLPPALVFGQHGYLMPCHGWQPPGGVHLHAYAIDLARS 159

Query: 87  ADGNWWVIADRTQGPSGSGYALQNRQIMTRALPEAMRDMHVQPLLNYFHALHQCLTRLAP 146
            DG WWV++DRTQGPSG+GYALQNRQIM RA+PEA+RDMHV+    YFH L   LTRLAP
Sbjct: 160 VDGTWWVVSDRTQGPSGTGYALQNRQIMARAMPEALRDMHVESPHRYFHTLRAMLTRLAP 219

Query: 147 KSSEPPMVVLLTPGPYNETYSEHAFLAHTLGFPLVEGVDLTVRGDMVYLKTLTGLRRVHA 206
              E P++VLLTPGPYNETYSEHAFLAHTLGFPLVEGVDLTVRG+ V+LKTL GLRRVHA
Sbjct: 220 AQGEVPLIVLLTPGPYNETYSEHAFLAHTLGFPLVEGVDLTVRGEQVFLKTLNGLRRVHA 279

Query: 207 IMRRLDDDYCDPLELRSDSALGIPGLTQAARSGNVLIANALGSGVLESTALHGFLPGISQ 266
           I+RR+DDDYCDPLELR+DSALG+PGLTQAAR GNVLIAN+LGSGVLESTALHGFLP I++
Sbjct: 280 ILRRMDDDYCDPLELRADSALGVPGLTQAARLGNVLIANSLGSGVLESTALHGFLPAINE 339

Query: 267 RLLGEELALPAVASWWCGEKPALEYTLAHLEELVIMPAFPSMRMQPVFGHTLNATTRRRL 326
           RL GE L LP+VASWWCGEKPAL+YTLAH +ELVI+PAF SMRMQPVFGH++    RRRL
Sbjct: 340 RLYGEPLLLPSVASWWCGEKPALDYTLAHFDELVIVPAFSSMRMQPVFGHSVTGAARRRL 399

Query: 327 IESLQLQPHAYVAQEWVRLSQAPVLSRSGEYHLTNRTVSLRVFAAADGGXASAATSSRCS 386
           IESLQLQPHAY AQEWVRLSQAPV+SRSG+Y L NRT+SLRVFA ADG           +
Sbjct: 400 IESLQLQPHAYAAQEWVRLSQAPVMSRSGDYRLMNRTISLRVFAVADGEGGYQVMPGGLT 459

Query: 387 RAAP 390
           R AP
Sbjct: 460 RVAP 463


>gi|300309971|ref|YP_003774063.1| hypothetical protein Hsero_0636
           [Herbaspirillum seropedicae SmR1]
          Length = 475

 Score =  238 bits (607), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 127/348 (36%), Positives = 196/348 (56%), Gaps = 11/348 (3%)

Query: 27  RARLLNAVLGDLYGEQHLLAEGLLPPALVFGQHGYLWPCRDVRPPGGVHLHLYAIDLARS 86
           R R LN  + D+Y EQ ++  G++PP  +F    Y    +DV     ++ H+  +D+ R+
Sbjct: 94  RVRALNMFIHDIYHEQKIVKAGIIPPEQIFQNAQYRREMQDVNVVNDIYAHIAGVDIVRA 153

Query: 87  ADGNWWVIADRTQGPSGSGYALQNRQIMTRALPEAMRDMHVQPLLNYFHALHQCLTRLAP 146
            +G ++V+ D  + PSG  Y L+NR++M R  P+      + P+ +Y   L   L  +AP
Sbjct: 154 GEGEFYVLEDNLRVPSGVSYMLENRKMMMRLFPDLFTRHKIAPVDHYPDLLLDNLRSVAP 213

Query: 147 KSSEPPMVVLLTPGPYNETYSEHAFLAHTLGFPLVEGVDLTVRGDMVYLKTLTGLRRVHA 206
                P VV++TPG YN  Y EHAFLA  +G  LVEG DL V+ ++VY++T  G +RV  
Sbjct: 214 AGVTDPTVVVMTPGMYNSAYFEHAFLAQQMGVELVEGQDLFVKDNVVYMRTTRGPKRVDV 273

Query: 207 IMRRLDDDYCDPLELRSDSALGIPGLTQAARSGNVLIANALGSGVLESTALHGFLPGISQ 266
           I RR+DDD+ DPL  R DSALG+PGL QA R+G V + NA+G+GV +  +++ ++P + +
Sbjct: 274 IYRRIDDDFLDPLAFRPDSALGVPGLLQAYRAGKVTLTNAIGTGVADDKSIYPYVPDMVR 333

Query: 267 RLLGEELALPAVASWWCGEKPALEYTLAHLEELVIMPAFPSMRMQPVFGHTLNATTRRRL 326
             L E+  L  V ++ C +K  L YTLA+LE+LV+      +     +G  +   + R+ 
Sbjct: 334 FYLSEDPILNNVPTYQCRKKEDLSYTLANLEKLVV----KEVHGAGGYGMLVGPASTRQE 389

Query: 327 IESLQ----LQPHAYVAQEWVRLSQAPVLSRSGEYHLTNRTVSLRVFA 370
           IE  +     +P  Y+AQ  + LS  P    SG   +  R + LR F 
Sbjct: 390 IEDFRARIIAKPDGYIAQPTLALSVCPTYVESG---IAPRHLDLRPFV 434


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,214,836
Number of extensions: 54569
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 2
Length of query: 396
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,207,925
Effective search space: 373248825
Effective search space used: 373248825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)