BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0071.p
         (584 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309975|ref|YP_003774067.1| transglutaminase-like superfami...   946   0.0  

>gi|300309975|ref|YP_003774067.1| transglutaminase-like superfamily
            domain-containing protein [Herbaspirillum seropedicae
            SmR1]
          Length = 1128

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/519 (86%), Positives = 482/519 (92%)

Query: 66   AATGGAPVLFQSADWITRTALCAEVRNGVLYLFMPPLAQLENYLELVAAIEATAEELGQP 125
            + T   P  F+SA+W+TRTALCAEVRNGV YLFMPPLAQLE+YLELVAAIEA AEEL QP
Sbjct: 610  SPTQPVPAPFESANWLTRTALCAEVRNGVFYLFMPPLAQLEHYLELVAAIEAVAEELKQP 669

Query: 126  VLMEGYEPPNDPRVRKFSVTPDPGVIEVNIQPAYNWSELVDQTTHLYEAGRESRLTTEKF 185
            VL+EGYEPP+DPR+RKFSVTPDPGVIEVNIQPA NWSELV+QTTHLY+A R SRLTTEKF
Sbjct: 670  VLLEGYEPPHDPRLRKFSVTPDPGVIEVNIQPANNWSELVEQTTHLYDAARASRLTTEKF 729

Query: 186  MLDGHHSGTGGGNHMVMGGATTADSPFLRRPDLLRSLISYWHNHPSLSYLFSGMFIGPTS 245
            MLDGHHSGTGGGNHMV+GG TT+DSPFLRRPDLLRSLISYWHNHPSLSYLFSGMFIGPTS
Sbjct: 730  MLDGHHSGTGGGNHMVLGGITTSDSPFLRRPDLLRSLISYWHNHPSLSYLFSGMFIGPTS 789

Query: 246  QAPRIDEARNDSTVEIELAFAEMEKQLEKGGCAPWLVDRLLRNLLIDVTGNTHRAEFCID 305
            QAPRIDEARNDSTVEIELAF EM+KQ+ +G C PWLVDRLLRNLLIDVTGNTHRAEFCID
Sbjct: 790  QAPRIDEARNDSTVEIELAFNEMDKQVARGDCPPWLVDRLLRNLLIDVTGNTHRAEFCID 849

Query: 306  KLYSPDSATGRLGLLELRAFEMPPHARMSLTQQLLLRALVARFWKTPYKPQRLVRWGTEL 365
            K+YSPDSATGRLGLLELRAFEMPPHARMSLTQQLLLR LVARFWK PYKP RLVRWGTEL
Sbjct: 850  KMYSPDSATGRLGLLELRAFEMPPHARMSLTQQLLLRGLVARFWKQPYKPARLVRWGTEL 909

Query: 366  HDRFLLPHFIWQDFNDIMDDMQEAGYPMQAEWFAPHFEFRFPKIGDFAVKGMELELRTAL 425
            HDRFLLPHFI QDF D+M DM EAGYPM+AEWFAPH EFR PKIGD+AVKGM++ELRTAL
Sbjct: 910  HDRFLLPHFIEQDFADVMADMNEAGYPMRAEWFAPHMEFRCPKIGDYAVKGMQIELRTAL 969

Query: 426  EPWHVLGEEGSSTGTARYVDSSVERLEVKVRGMAKDRYVLTCNGVAVPLQPTGVVGEFVT 485
            EPWHVLGEE S  GTARYVDSS+ERL+VK+ GMA DRYVLTCNGV+VPLQPTG VG+FV 
Sbjct: 970  EPWHVLGEESSGGGTARYVDSSLERLQVKISGMASDRYVLTCNGVSVPLQPTGTVGQFVA 1029

Query: 486  GVRYRAWQPPSALHPTIGIDSPLTFDLVDTWNGRSLGGCQYHVVHPGGRSYETFPVNAFE 545
            GVRYRAWQPPSALHPTI +DSPLTFDLVDTWNGRSLGGCQYHVVHPGGR+YETFPVNAFE
Sbjct: 1030 GVRYRAWQPPSALHPTIPVDSPLTFDLVDTWNGRSLGGCQYHVVHPGGRNYETFPVNAFE 1089

Query: 546  AESRRLARYFRLNHTPGKMDVSAARPSIEFPFTLDLRHY 584
            AESRRLARYFR+NHTPGK+ V+ AR SIEFPFTLDLR++
Sbjct: 1090 AESRRLARYFRMNHTPGKLQVTPARASIEFPFTLDLRYF 1128


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,988,103
Number of extensions: 89165
Number of successful extensions: 204
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 494
Effective length of database: 1,193,720
Effective search space: 589697680
Effective search space used: 589697680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)