BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0070.p
         (211 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309975|ref|YP_003774067.1| transglutaminase-like superfami...   223   9e-60

>gi|300309975|ref|YP_003774067.1| transglutaminase-like superfamily
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
          Length = 1128

 Score =  223 bits (568), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 105/145 (72%), Positives = 116/145 (80%)

Query: 34  RPGQVDDDIPERFLKGVAARLSLDGKHIFPAYEDVFYYMWRERRLPGNVDPFDSKLDDKQ 93
           RP   D  +   FL  VA RL +DGK++FPAYEDVFYYMWRERRLPGNVDPFDS++DDKQ
Sbjct: 417 RPNVSDKIVTSHFLHRVAQRLRVDGKNVFPAYEDVFYYMWRERRLPGNVDPFDSRVDDKQ 476

Query: 94  ERARLMRVFSQGLDKVAGHVLPVARRPDDLGWQSGDWFLRSERCYLYPGDSPLGYRLPLD 153
           ER RLM+VF+QGL    GHVLP+AR  D  GWQSG WFLRSERCYLYPGDSPLGYRLPLD
Sbjct: 477 ERERLMKVFTQGLQSAVGHVLPLARSHDGQGWQSGAWFLRSERCYLYPGDSPLGYRLPLD 536

Query: 154 SQPWVKSTDYPYVHAADPTQQFAPL 178
           S PWVK  +YP V+ ADPTQ F PL
Sbjct: 537 SLPWVKEGEYPAVYPADPTQAFRPL 561


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 773,765
Number of extensions: 34247
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,236,335
Effective search space: 160723550
Effective search space used: 160723550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)