BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0069.p
         (175 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309974|ref|YP_003774066.1| poly-beta-hydroxyalkanoate depo...   255   2e-69
gi|300310951|ref|YP_003775043.1| poly[D(-)-3-hydroxyalkanoate] d...   137   4e-34

>gi|300309974|ref|YP_003774066.1| poly-beta-hydroxyalkanoate
           depolymerase [Herbaspirillum seropedicae SmR1]
          Length = 408

 Score =  255 bits (651), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 116/146 (79%), Positives = 133/146 (91%)

Query: 1   MQLAAFMNMNLNRHVDAFRNLYTYLIEGEHDKAEAIKVFYEEYFAMSDLPAEFYLETVRV 60
           +QLAAFMNMNL+RHV+AF  LY +L++GEH +A+ IK FYEEYFAM+DLPAEFYLETVR 
Sbjct: 253 VQLAAFMNMNLSRHVEAFGKLYHHLVDGEHARADQIKDFYEEYFAMADLPAEFYLETVRT 312

Query: 61  VFQEHALPLGLLQFQGRPVNLKAIRRTALFTVEGEKDDICAVGQTVAAQDMCSSIRPYMR 120
           VFQEHALPLG L + GRPV  +AIRRTALFT+EGEKDDICAVGQT+AAQ++CS IRPYMR
Sbjct: 313 VFQEHALPLGKLSYAGRPVEPRAIRRTALFTIEGEKDDICAVGQTLAAQELCSGIRPYMR 372

Query: 121 LHHVQTAVGHYGVFNGRRWENEIYPK 146
           LHHVQTAVGHYGVFNGRRW+NEIYP+
Sbjct: 373 LHHVQTAVGHYGVFNGRRWDNEIYPR 398


>gi|300310951|ref|YP_003775043.1| poly[D(-)-3-hydroxyalkanoate]
           depolymerase [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score =  137 bits (346), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/146 (45%), Positives = 93/146 (63%)

Query: 1   MQLAAFMNMNLNRHVDAFRNLYTYLIEGEHDKAEAIKVFYEEYFAMSDLPAEFYLETVRV 60
           +Q A F+ MN  RH  +  + Y +L +G+   AE  + FY+EY A+ D+PAEFYLET++V
Sbjct: 257 LQHAGFVAMNPRRHAQSHWDFYMHLRDGDDASAEEHRKFYDEYNAVLDMPAEFYLETIKV 316

Query: 61  VFQEHALPLGLLQFQGRPVNLKAIRRTALFTVEGEKDDICAVGQTVAAQDMCSSIRPYMR 120
           VFQ+  L  G  + +G+ V  + I+  ALFT+EGE DDI   GQT AAQ++CSSI    +
Sbjct: 317 VFQDFNLARGTWEIEGQLVRPQDIKSVALFTIEGELDDISGSGQTQAAQELCSSIPKARK 376

Query: 121 LHHVQTAVGHYGVFNGRRWENEIYPK 146
            H      GHYG+F+GRRW   + PK
Sbjct: 377 QHFTVPKAGHYGIFSGRRWREIVCPK 402


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 480,366
Number of extensions: 17811
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 175
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 96
Effective length of database: 1,245,805
Effective search space: 119597280
Effective search space used: 119597280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)