BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0067.p
         (94 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309973|ref|YP_003774065.1| glutathione S-transferase [Herb...   170   2e-44
gi|300313568|ref|YP_003777660.1| glutathione S-transferase [Herb...    80   2e-17

>gi|300309973|ref|YP_003774065.1| glutathione S-transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 218

 Score =  170 bits (430), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 79/94 (84%), Positives = 89/94 (94%), Gaps = 1/94 (1%)

Query: 2   FKIWSRAQADIQRITTIWKECLATYGGPYLFGE-RTMADAMYAPVITRFITYDVKLEPIC 60
           FK+WSRA+ADI RITTIWKECLA YGGP+LFGE RT+ADAMYAPV+TRF+TYDVKL+PIC
Sbjct: 125 FKVWSRAEADIVRITTIWKECLAKYGGPFLFGEQRTVADAMYAPVVTRFMTYDVKLDPIC 184

Query: 61  AAYSKRIMAMPEMKEWIAAAQKEPEDIDELDVEF 94
            AY+KRIMAMPEM+EWI AA+KEPEDIDELDVEF
Sbjct: 185 TAYAKRIMAMPEMQEWITAAKKEPEDIDELDVEF 218


>gi|300313568|ref|YP_003777660.1| glutathione S-transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score = 80.5 bits (197), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 53/81 (65%), Gaps = 1/81 (1%)

Query: 6   SRAQADIQRITTIWKECLATYGGP-YLFGERTMADAMYAPVITRFITYDVKLEPICAAYS 64
           + AQADI R+  IW+ECL+ +G   +LFG+ ++ADA YAPV+ RFI+Y V L P   AY+
Sbjct: 147 AEAQADIARVCEIWEECLSQFGHHDFLFGDFSIADAFYAPVVMRFISYQVPLAPALQAYA 206

Query: 65  KRIMAMPEMKEWIAAAQKEPE 85
            R+   P +  WIA A  E E
Sbjct: 207 DRVREHPAVARWIAEALAEKE 227


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 301,885
Number of extensions: 9557
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 2
Length of query: 94
Length of database: 1,619,870
Length adjustment: 63
Effective length of query: 31
Effective length of database: 1,321,565
Effective search space: 40968515
Effective search space used: 40968515
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)