BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0065.p
         (454 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309971|ref|YP_003774063.1| hypothetical protein Hsero_0636...   778   0.0  
gi|300309976|ref|YP_003774068.1| hypothetical protein Hsero_0641...   236   2e-63

>gi|300309971|ref|YP_003774063.1| hypothetical protein Hsero_0636
           [Herbaspirillum seropedicae SmR1]
          Length = 475

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/419 (88%), Positives = 396/419 (94%), Gaps = 4/419 (0%)

Query: 1   MANFFDEMYSDGA----VSVRKHYDEFAAWLSSQTAETIVRKRAESDLIFRRVGITFAVY 56
           MA+FFDEMYS  +      VR+HY EFA WLS+Q+AETI RKRAESDLIFRRVGITFAVY
Sbjct: 1   MAHFFDEMYSGESHGNEAQVRQHYAEFANWLSAQSAETIARKRAESDLIFRRVGITFAVY 60

Query: 57  GNDAGTERLIPFDIIPRIIHAAEWAKLEAGLVQRVKALNMFIHDIYHSQKIIKAGVIPAE 116
           GNDAGTERLIPFDIIPRIIH AEWA+LEAGLVQRV+ALNMFIHDIYH QKI+KAG+IP E
Sbjct: 61  GNDAGTERLIPFDIIPRIIHKAEWARLEAGLVQRVRALNMFIHDIYHEQKIVKAGIIPPE 120

Query: 117 QILKNAQYRPEMQDVDVASDIYAHIAGVDIVRAGEGEFYVLEDNLRVPSGVSYMLENRKM 176
           QI +NAQYR EMQDV+V +DIYAHIAGVDIVRAGEGEFYVLEDNLRVPSGVSYMLENRKM
Sbjct: 121 QIFQNAQYRREMQDVNVVNDIYAHIAGVDIVRAGEGEFYVLEDNLRVPSGVSYMLENRKM 180

Query: 177 MMRLFPELFTRNKIAPVDHYPDMLLDNLRSVAPVGVVDPTVVVMTPGMYNSAYFEHAFLA 236
           MMRLFP+LFTR+KIAPVDHYPD+LLDNLRSVAP GV DPTVVVMTPGMYNSAYFEHAFLA
Sbjct: 181 MMRLFPDLFTRHKIAPVDHYPDLLLDNLRSVAPAGVTDPTVVVMTPGMYNSAYFEHAFLA 240

Query: 237 QQMGVELVEGQDLFVKDNTVYMRTTRGPKRVDVIYRRIDDDYLDPLAFRADSSLGVPGLL 296
           QQMGVELVEGQDLFVKDN VYMRTTRGPKRVDVIYRRIDDD+LDPLAFR DS+LGVPGLL
Sbjct: 241 QQMGVELVEGQDLFVKDNVVYMRTTRGPKRVDVIYRRIDDDFLDPLAFRPDSALGVPGLL 300

Query: 297 SAYRAGKVTLTNAIGTGVADDKSIYPYVPDMIKFYLSEEPILNNVPTYQCRKKDDLSYTL 356
            AYRAGKVTLTNAIGTGVADDKSIYPYVPDM++FYLSE+PILNNVPTYQCRKK+DLSYTL
Sbjct: 301 QAYRAGKVTLTNAIGTGVADDKSIYPYVPDMVRFYLSEDPILNNVPTYQCRKKEDLSYTL 360

Query: 357 ANLDKLVVKEVHGAGGYGMLVGPASTKQEIEDFRQRVIAKPDGYIAQPTLALSVCPTYV 415
           ANL+KLVVKEVHGAGGYGMLVGPAST+QEIEDFR R+IAKPDGYIAQPTLALSVCPTYV
Sbjct: 361 ANLEKLVVKEVHGAGGYGMLVGPASTRQEIEDFRARIIAKPDGYIAQPTLALSVCPTYV 419


>gi|300309976|ref|YP_003774068.1| hypothetical protein Hsero_0641
           [Herbaspirillum seropedicae SmR1]
          Length = 833

 Score =  236 bits (603), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 136/413 (32%), Positives = 215/413 (52%), Gaps = 11/413 (2%)

Query: 5   FDEMYS-DGAVSVRKHYDEFAAWLSSQTAETIVRKRAESDLIFRRVGITFAVYGNDAGTE 63
           +DEM + DG   +R H+      L + + + + R+  E        G+T+ VY +  G  
Sbjct: 16  YDEMLAADG--RLRPHWRTLIDQLENLSPDMLRRRANEVRDAIASDGVTYNVYADPKGAN 73

Query: 64  RLIPFDIIPRIIHAAEWAKLEAGLVQRVKALNMFIHDIYHSQKIIKAGVIPAEQILKNAQ 123
           R    D++P ++ + EW  LE  + QR + +N  + DIY  Q +I  G++P   +     
Sbjct: 74  RPWELDLLPHLVSSEEWDFLERAVGQRARLMNGLLSDIYGPQTLIAEGLLPPALVFGQHG 133

Query: 124 YRPEMQDVDVASDIYAHIAGVDIVRAGEGEFYVLEDNLRVPSGVSYMLENRKMMMRLFPE 183
           Y            ++ H   +D+ R+ +G ++V+ D  + PSG  Y L+NR++M R  PE
Sbjct: 134 YLMPCHGWQPPGGVHLHAYAIDLARSVDGTWWVVSDRTQGPSGTGYALQNRQIMARAMPE 193

Query: 184 LFTRNKIAPVDHYPDMLLDNLRSVAPVGVVDPTVVVMTPGMYNSAYFEHAFLAQQMGVEL 243
                 +     Y   L   L  +AP     P +V++TPG YN  Y EHAFLA  +G  L
Sbjct: 194 ALRDMHVESPHRYFHTLRAMLTRLAPAQGEVPLIVLLTPGPYNETYSEHAFLAHTLGFPL 253

Query: 244 VEGQDLFVKDNTVYMRTTRGPKRVDVIYRRIDDDYLDPLAFRADSSLGVPGLLSAYRAGK 303
           VEG DL V+   V+++T  G +RV  I RR+DDDY DPL  RADS+LGVPGL  A R G 
Sbjct: 254 VEGVDLTVRGEQVFLKTLNGLRRVHAILRRMDDDYCDPLELRADSALGVPGLTQAARLGN 313

Query: 304 VTLTNAIGTGVADDKSIYPYVPDMIKFYLSEEPILNNVPTYQCRKKDDLSYTLANLDKLV 363
           V + N++G+GV +  +++ ++P + +    E  +L +V ++ C +K  L YTLA+ D+LV
Sbjct: 314 VLIANSLGSGVLESTALHGFLPAINERLYGEPLLLPSVASWWCGEKPALDYTLAHFDELV 373

Query: 364 V----KEVHGAGGYGMLVGPASTKQEIEDFRQRVIAKPDGYIAQPTLALSVCP 412
           +      +     +G  V  A+ ++ IE  +     +P  Y AQ  + LS  P
Sbjct: 374 IVPAFSSMRMQPVFGHSVTGAARRRLIESLQ----LQPHAYAAQEWVRLSQAP 422


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,221,310
Number of extensions: 47487
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 2
Length of query: 454
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 366
Effective length of database: 1,203,190
Effective search space: 440367540
Effective search space used: 440367540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)