BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0063.p
         (232 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309970|ref|YP_003774062.1| hypothetical protein Hsero_0635...   399   e-113

>gi|300309970|ref|YP_003774062.1| hypothetical protein Hsero_0635
           [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score =  399 bits (1025), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/235 (85%), Positives = 210/235 (89%), Gaps = 3/235 (1%)

Query: 1   VRGALTTEAWEIQNATWIKMQGYLQTNALEQNPSDFFEWVKHRSHLSRGVTIGTMLKDEA 60
           VRGALTTEAWEIQNATWIKMQ YLQTNALEQNPSDFFEWVKHRSHLSRGVTIGTML+DEA
Sbjct: 99  VRGALTTEAWEIQNATWIKMQSYLQTNALEQNPSDFFEWVKHRSHLSRGVTIGTMLEDEA 158

Query: 61  FHFIRLGTFLERADNTARIIDVKFHGAKETVKPGQSQQQSLLSA---NAKAQDSQIDFYY 117
           FHFIRLGTFLERADNTARIIDVKFHGAKET    Q Q QS   +    A  +  Q+DFYY
Sbjct: 159 FHFIRLGTFLERADNTARIIDVKFHGAKETQSHKQGQSQSQSQSQSQGAAEETGQLDFYY 218

Query: 118 WAAILRSVSGFEIYRKVYRDVITPERVAELLILRADMPRSLAACMDHVLSNLKHVRNDVS 177
           WAAILRSVSGFEIYRKVYRDVITPERVAELLILRADMPRSL ACM +V+SNL HVRNDVS
Sbjct: 219 WAAILRSVSGFEIYRKVYRDVITPERVAELLILRADMPRSLLACMGNVISNLHHVRNDVS 278

Query: 178 ADTERFAGKLDADLKFSRIEEVFDAGLHDYLTVFLERIFELGNRISKDFLVPLAA 232
           ADTERFAGKL ADLKF+RIEE+ +AGLHD LT FLERIFELGNRIS+DFLVPLAA
Sbjct: 279 ADTERFAGKLHADLKFARIEEILEAGLHDTLTEFLERIFELGNRISRDFLVPLAA 333


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 663,230
Number of extensions: 23772
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,231,600
Effective search space: 184740000
Effective search space used: 184740000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)