BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0060.p
         (235 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309966|ref|YP_003774058.1| DnaA regulatory inactivator Hda...   293   8e-81

>gi|300309966|ref|YP_003774058.1| DnaA regulatory inactivator Hda
           protein [Herbaspirillum seropedicae SmR1]
          Length = 238

 Score =  293 bits (750), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 151/236 (63%), Positives = 182/236 (77%), Gaps = 7/236 (2%)

Query: 1   MRQLLLDLSAQQPPTFDTFVTGQNAELLQRLQDIAAAHAQPTL------NDRFIYLWGET 54
           M+Q+ LDLSA QP +FD+FVTG+NAELL+RL+ +A A    +        DRF+YLW E 
Sbjct: 1   MKQIPLDLSADQPQSFDSFVTGRNAELLERLKLLATAGVDQSTQTGSASTDRFLYLWAEA 60

Query: 55  GAGKTHLLHSLAHAGAQEGAIGSRLIPADADDSAFDYDPSIQCYLLDDCEQLPPASQIAA 114
           GAGKTHLL +LA   AQEG   +RLI AD+ D+AFDY P I  YLLDD +QL    QIAA
Sbjct: 61  GAGKTHLLQALATRVAQEGR-QARLIRADSPDAAFDYSPQITHYLLDDVDQLFEEQQIAA 119

Query: 115 FALFNQIRERGGYLVSAGAQPPAQLQVREDLRTRLGWGLIYQLHGLTDDEKIAALTQSAQ 174
           F LFNQIRE+GG++V +G  PP +L++REDLRTRLGWGLIYQ+H L+DDEKIAAL Q   
Sbjct: 120 FNLFNQIREQGGWMVCSGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALLQITL 179

Query: 175 ARGMAVSVAILSYLLTHYRRDMPSLSRMLDALDRYSLETKRPITLPLLRDLLQQEA 230
            RG+ +  A++ Y+LTHYRRDMPSLSRMLDALDRYSL TKR ITLPLLR+LLQQE+
Sbjct: 180 DRGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQES 235


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 765,563
Number of extensions: 33038
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 153
Effective length of database: 1,231,600
Effective search space: 188434800
Effective search space used: 188434800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)