BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0059.p
         (240 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309965|ref|YP_003774057.1| phosphoserine phosphatase [Herb...   348   3e-97

>gi|300309965|ref|YP_003774057.1| phosphoserine phosphatase
           [Herbaspirillum seropedicae SmR1]
          Length = 227

 Score =  348 bits (892), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 165/227 (72%), Positives = 193/227 (85%), Gaps = 1/227 (0%)

Query: 1   MNLALFDLDHTLIPIDSDHEWGEFLARTGAIDATAFRKANDEWFAHYQAGTLDPVKYLEF 60
           MNLALFDLDHTL+P+DSDHEWGEF+AR GA+DA +FRKAND+WFAHYQ GTLDPV YLEF
Sbjct: 1   MNLALFDLDHTLLPLDSDHEWGEFMARIGAVDADSFRKANDQWFAHYQNGTLDPVAYLEF 60

Query: 61  AFGTLSKFPRAQLDAWHAQFMDEVIKPSMVPAALALVQKHLDAGDLVAIITATNSFVTEP 120
           A G L++F R QLD  H QFMDEV+KP+++P A+ALV+KHLDAGDLVAI+TATN FVT+P
Sbjct: 61  ALGNLARFSREQLDEMHLQFMDEVVKPAILPQAVALVKKHLDAGDLVAIVTATNHFVTKP 120

Query: 121 IAKLFKVHHLIAALPEFDAEGNVTGRLAGTPTFGPGKIVHTQAWLQEQGKSIADFPQSHF 180
           IA  F V HLIAA+P  DA+GN+TG+L GTPTFGPGKIVHT+AWL   G ++  F +S+F
Sbjct: 121 IALHFGVEHLIAAMPVLDAQGNLTGKLDGTPTFGPGKIVHTEAWLDRLGHALDKFERSYF 180

Query: 181 YSDSQNDIPLLAAVTHPVATNPNDKLRAHAIAQGWPILNLF-DAHAQ 226
           YSDSQNDIPLL  VT P+ATNPNDKL AHA A+GWP+LNLF D HAQ
Sbjct: 181 YSDSQNDIPLLERVTDPIATNPNDKLLAHAQARGWPVLNLFADGHAQ 227


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 783,547
Number of extensions: 33230
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,226,865
Effective search space: 192617805
Effective search space used: 192617805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)