BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0054.p
         (109 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309961|ref|YP_003774053.1| chemotaxis-specific methylester...   178   1e-46
gi|300311338|ref|YP_003775430.1| chemotaxis-specific methylester...   124   1e-30
gi|300312321|ref|YP_003776413.1| protein-glutamate methylesteras...    82   1e-17
gi|300311029|ref|YP_003775121.1| protein-glutamate methylesteras...    70   5e-14
gi|300312675|ref|YP_003776767.1| protein-glutamate methylesteras...    62   1e-11

>gi|300309961|ref|YP_003774053.1| chemotaxis-specific methylesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 381

 Score =  178 bits (451), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 82/108 (75%), Positives = 98/108 (90%)

Query: 1   MMVKRDGVQYYVEVVNGPLVSRHKPSVDVLFRSVAKAAGKNAVGIIMTGMGDDGARGMKE 60
           ++V+R+G+QYYVE ++GPLVSRHKPSVDVLFRS+AKAAG NAVGIIMTGMGDDGARGM+E
Sbjct: 272 LVVRREGLQYYVETLDGPLVSRHKPSVDVLFRSLAKAAGSNAVGIIMTGMGDDGARGMRE 331

Query: 61  LHDAGASTYAQDESSCVVFGMPKEAVLQGGVSDVISLENMSSVINQYG 108
           L D G +TYAQDE+S VVFGMPKEA+ QGGV DVI+LE++S+VI QY 
Sbjct: 332 LADCGGATYAQDEASSVVFGMPKEAIQQGGVGDVITLEHISAVIEQYA 379


>gi|300311338|ref|YP_003775430.1| chemotaxis-specific methylesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score =  124 bits (312), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 56/96 (58%), Positives = 74/96 (77%)

Query: 5   RDGVQYYVEVVNGPLVSRHKPSVDVLFRSVAKAAGKNAVGIIMTGMGDDGARGMKELHDA 64
           R G  Y  ++  GP V+RH+PSVDVLF+S A  AGKNAVG+I+TGMG DGA+GM E+ +A
Sbjct: 246 RSGANYMTQLDQGPPVNRHRPSVDVLFQSAATCAGKNAVGVILTGMGKDGAQGMLEMRNA 305

Query: 65  GASTYAQDESSCVVFGMPKEAVLQGGVSDVISLENM 100
           GA  +AQDE+SCVVFGMP+EA+  G   +V++L+ M
Sbjct: 306 GAYNFAQDEASCVVFGMPREAIAVGAAHEVLALQAM 341


>gi|300312321|ref|YP_003776413.1| protein-glutamate methylesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 342

 Score = 81.6 bits (200), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 1   MMVKRDGVQYYVEVVNGPLVSRHKPSVDVLFRSVAKAAGKNAVGIIMTGMGDDGARGMKE 60
           ++VK  G   YVE   G     ++PSVDV F+S+ +       G+++TGMG DGA G+K 
Sbjct: 237 LVVKEGGRLGYVE---GAPNDVYRPSVDVFFQSIVRHWPGKVAGLLLTGMGRDGAAGLKA 293

Query: 61  LHDAGASTYAQDESSCVVFGMPKEAVLQGGVSDVISLENMSSVIN 105
           L D+GA T AQD+ SC V+GMPK AV      +V+ +  M++ + 
Sbjct: 294 LRDSGAHTMAQDQKSCAVYGMPKAAVALNAAVEVLPVTGMAARLQ 338


>gi|300311029|ref|YP_003775121.1| protein-glutamate methylesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 353

 Score = 69.7 bits (169), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/105 (38%), Positives = 64/105 (60%), Gaps = 5/105 (4%)

Query: 1   MMVKRDGVQYYVEVVNGPLVSRH--KPSVDVLFRSVAKA-AGKNAVGIIMTGMGDDGARG 57
           M+V + G   ++ V+  P    H   PSV++L RS  ++ A +  +G+++TGMG+DGA  
Sbjct: 243 MLVAKRGS--HLSVLPKPESPTHLWHPSVELLARSALQSMAARQLIGVMLTGMGNDGAAA 300

Query: 58  MKELHDAGASTYAQDESSCVVFGMPKEAVLQGGVSDVISLENMSS 102
             E+   G  T A+ ESSCVVFGMPK+ + +GG S V+    +++
Sbjct: 301 FAEICGDGGRTIAESESSCVVFGMPKDLIDRGGASVVLPASKIAT 345


>gi|300312675|ref|YP_003776767.1| protein-glutamate methylesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 211

 Score = 61.6 bits (148), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 51/93 (54%)

Query: 16  NGPLVSRHKPSVDVLFRSVAKAAGKNAVGIIMTGMGDDGARGMKELHDAGASTYAQDESS 75
           N  LV+  +P++DVLF S A   G   +GI++TG   DGA GM+ +  AG  T  Q    
Sbjct: 108 NDELVNYSRPAIDVLFESAADVYGPRLLGILLTGGNHDGAAGMQAIARAGGVTVVQSPQQ 167

Query: 76  CVVFGMPKEAVLQGGVSDVISLENMSSVINQYG 108
             V  MP +A+  G +  V++L+ ++ ++   G
Sbjct: 168 AQVPYMPAQALAMGNIDYVLTLQQIADLLRTLG 200


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 330,942
Number of extensions: 12594
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 5
Length of query: 109
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 37
Effective length of database: 1,278,950
Effective search space: 47321150
Effective search space used: 47321150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)