BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0051.p
         (113 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311337|ref|YP_003775429.1| chemotaxis protein [Herbaspiril...    60   4e-11
gi|300313512|ref|YP_003777604.1| chemoreceptor glutamine deamida...    55   2e-09

>gi|300311337|ref|YP_003775429.1| chemotaxis protein [Herbaspirillum
           seropedicae SmR1]
          Length = 201

 Score = 60.1 bits (144), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 10  GEVYFGQGDLQVETLLGSCVAITLWHPALHFGGLCHFVLPERRHPVKPDADGEHAHD-AP 68
           GE YF   D+ + T+LGSCV+  +       GG+ HF+L        PD  G+     + 
Sbjct: 28  GEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGGMNHFML--------PDGGGDDGSPVSA 79

Query: 69  DGRYGDEALSRLLEQVRLHGTRIGDYTVKVFGGGNVLGG 107
             RYG  A+  L+  V   G R  +   KVFGGGNVL G
Sbjct: 80  SARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRG 118


>gi|300313512|ref|YP_003777604.1| chemoreceptor glutamine deamidase
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score = 54.7 bits (130), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 49/101 (48%), Gaps = 13/101 (12%)

Query: 10  GEVYFGQGDLQVETLLGSCVAITLWHPALHFGGLCHFVLPERRHPVKPDADGEHAHDAP- 68
           GE ++   D+ + T+LGSCV+  L       GG+ HF+LP          DG    D+P 
Sbjct: 31  GEYFYTGEDMMIVTVLGSCVSACLRDRVSGVGGMNHFMLP----------DGGGEADSPV 80

Query: 69  --DGRYGDEALSRLLEQVRLHGTRIGDYTVKVFGGGNVLGG 107
               RYG  A+  L+  V   G R  +   KVFGGG VL G
Sbjct: 81  SASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRG 121


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.146    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 439,278
Number of extensions: 19479
Number of successful extensions: 38
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 2
Length of query: 113
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 40
Effective length of database: 1,274,215
Effective search space: 50968600
Effective search space used: 50968600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)