BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0048.p (510 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis tra... 283 2e-77 gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis tra... 194 1e-50 gi|300310620|ref|YP_003774712.1| methyl-accepting chemotaxis tra... 189 3e-49 gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II ... 188 1e-48 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 184 2e-47 >gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 595 Score = 283 bits (725), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 169/315 (53%), Positives = 230/315 (73%), Gaps = 11/315 (3%) Query: 159 LVDE----NVHQAALNKASAAVLERKTLEEIVAVTALALVIALSLALYTRRIFARQIGGD 214 LVDE NV QA + A LE+K I + A ++V+ + + RI QIGG+ Sbjct: 213 LVDERTQANVRQAGKDYAE---LEQK----IFWLLAASVVVLFACLWLSYRIIRSQIGGE 265 Query: 215 PREVMRILRQIADGDLTVKFAVERHGQGSVLHSAQRMLEQLFLVLRDVNMAAVTLASASG 274 PR+ M +LR++A+GDLTV + + + SVL+S Q+M+ + V+ DV+ A +LASAS Sbjct: 266 PRDAMSVLRRVAEGDLTVVVPLPKGDKLSVLYSTQQMINKWTDVIGDVSGTATSLASASE 325 Query: 275 QLTSAAEQLSKNSSQQAADSEETSSAIGQISVTVGHNTANANHTNAIASESARAATEGRE 334 Q++S+++ LS N++QQAA+ EETS+++ +I+ T+ N NA T+ IAS SA AATEG E Sbjct: 326 QISSSSQALSHNAAQQAANVEETSASVEEITATIAQNADNARTTDGIASLSASAATEGGE 385 Query: 335 AVRETLEAMHQIVAKIGVIDDIAYQTNLLALNAAIEAARAGENGRGFAVVANEVRKLAER 394 AVRET+ AM QI +KIG+IDDIAYQTNLLALNAAIEAARAGE+G+GFAVVA EVRKLAER Sbjct: 386 AVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAER 445 Query: 395 SQIAAQEIVSVSDHSVSLAEKAGMLLEGMLPSIQQTADLVDEISLSARDQNAGLVQIHSA 454 SQ AAQEI++V++ SV LAEKAG LL M+PSI++TADLV EI+ ++ +Q+ GL QI++A Sbjct: 446 SQSAAQEIIAVAETSVGLAEKAGGLLNQMVPSIRKTADLVQEIAAASHEQSTGLEQINNA 505 Query: 455 IGQITQAIQLNAVAS 469 + Q+ Q Q+ A AS Sbjct: 506 VHQMAQTTQMTASAS 520 >gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 194 bits (494), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 121/290 (41%), Positives = 183/290 (63%) Query: 180 KTLEEIVAVTALALVIALSLALYTRRIFARQIGGDPREVMRILRQIADGDLTVKFAVERH 239 + LE + V L+I L R RQ+GG+P +V+ ++++++DGDL ++ Sbjct: 191 QALETVALVAGGVLLILLGAGWLLTRTLLRQMGGEPGDVVTVMQRLSDGDLVQTITLKPG 250 Query: 240 GQGSVLHSAQRMLEQLFLVLRDVNMAAVTLASASGQLTSAAEQLSKNSSQQAADSEETSS 299 + S++H+ Q+M+ +L V+ +V A L S + ++++ A+ LS+ S++QA E+TS Sbjct: 251 CRDSMMHAIQKMMTRLAQVVGEVRGNADGLVSTAEEVSATAQSLSRASTEQANGVEQTSE 310 Query: 300 AIGQISVTVGHNTANANHTNAIASESARAATEGREAVRETLEAMHQIVAKIGVIDDIAYQ 359 A+ QI + NA T+ IA+ +A A + E V++ + A+ QI KI VIDDIAYQ Sbjct: 311 ALAQIHALLQSTAQNARLTDQIAAAAALEARQCAETVKQMVAAIQQIAGKIAVIDDIAYQ 370 Query: 360 TNLLALNAAIEAARAGENGRGFAVVANEVRKLAERSQIAAQEIVSVSDHSVSLAEKAGML 419 TNLLALNA IEAA AGE+G GFAVVA EVR+LAERSQ AAQEI V+ +V+LA A Sbjct: 371 TNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSAAQEIDEVARANVTLACAAERQ 430 Query: 420 LEGMLPSIQQTADLVDEISLSARDQNAGLVQIHSAIGQITQAIQLNAVAS 469 L M+P+I +T+ LV +I S+ Q+ + QI +A Q+ Q IQ N+++S Sbjct: 431 LSDMVPTITRTSVLVQDIVQSSEQQSTAVSQISTAASQLAQVIQQNSLSS 480 >gi|300310620|ref|YP_003774712.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 573 Score = 189 bits (481), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 155/494 (31%), Positives = 259/494 (52%), Gaps = 37/494 (7%) Query: 1 MKLSSKLAVCFAFGALLTAAVGADGVVNLFRVNTMLQEIYAVNLLTIVNLNQTNKAAVDI 60 +K+S KL F AL+ A +G G++ ++N + E+Y L +V L + +A +D+ Sbjct: 7 LKVSHKLIGGFMIVALIGATIGTFGIIKAGQINDLATEMYE---LQVVGLRHSAQATLDL 63 Query: 61 AMSMQNMERA---EERVERKRISDALGYRLQDLGRAYANYKSSTALSDLERTLQQQADML 117 + S + + A E ER+ + L RL + A N ++ + L +A Sbjct: 64 SSSNRAIRTAILAESPAEREASLNDLTKRLDNTTLAL-NEAEQRFVTPEGKALVAKAREA 122 Query: 118 VDSYVKRVEQRRDQLLRDEDVKGNPDSLRIEYDSLRS----------QLAALVDENVHQA 167 Y V Q ++L ++ + R+ + S+R +L + +N + Sbjct: 123 FTKYKNAVMQTAEELRKEPLADARQSTSRL-FSSVRPLANEAEANMLKLMEVKKDNADR- 180 Query: 168 ALNKASAAVLER-KTLEEIVAVTALALVIALSLALYTRRIFARQIGGDPREVMRILRQIA 226 LN + + +TL ++ +T ++ ++L L+ R RQ+GG+PR+V IA Sbjct: 181 -LNDETDLIYAHIRTL--LLVLTFGGVLFGIALGLFISRNLTRQLGGEPRDVAAAADAIA 237 Query: 227 DGDLTVKFAVERHGQGSVLHSAQRMLEQLFLVLRDVNMAAVTLASASGQLTSAAEQLSKN 286 GDL+ + QGSV+ + M L V++ V ++ ++A+ S Q+ + LS Sbjct: 238 SGDLSTHIDISHAAQGSVVSAMHMMQGSLRKVVQTVRTSSESIATGSRQIATGNLDLSAR 297 Query: 287 SSQQAADSEETSSAIGQISVTVGHNTANANHTNAIASESARAATEGREAVRETLEAMHQI 346 + QQA+ EET+S++ +++ TV HN +NA + +A+ ++ A EG E V + ++ M I Sbjct: 298 TEQQASALEETASSMEELTSTVKHNASNAQNAKEMAATASTVAQEGGEVVAQVVDTMSAI 357 Query: 347 VAK-------IGVIDDIAYQTNLLALNAAIEAARAGENGRGFAVVANEVRKLAERSQIAA 399 I VID IA+QTN+LALNAA+EAARAGE GRGFAVVA EVR LA+RS AA Sbjct: 358 NESSRKMADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAA 417 Query: 400 QEIVSVSDHSVS-------LAEKAGMLLEGMLPSIQQTADLVDEISLSARDQNAGLVQIH 452 +EI ++ + SV LA++AG + G++ + + ++ EIS ++ +Q AG+ QI+ Sbjct: 418 KEIKALIEDSVDKVTVGARLADQAGTTMSGIVENAGKVTSIIGEISAASTEQTAGIEQIN 477 Query: 453 SAIGQITQAIQLNA 466 AI Q+ Q NA Sbjct: 478 QAIMQMDDVTQQNA 491 >gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 188 bits (477), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 120/268 (44%), Positives = 172/268 (64%), Gaps = 1/268 (0%) Query: 209 RQIGGDPREVMRILRQIADGDLTVKFAVERHGQGSVLHSAQRMLEQLFLVLRDVNMAAVT 268 R++GG+P I+RQIADG+L V+ + + + S+L++ M +L ++R+V ++ Sbjct: 240 RELGGEPAYAADIVRQIADGNLCVEVNLRSNDRSSLLYAMHTMRARLTEIMRNVTLSTQA 299 Query: 269 LASASGQLTSAAEQLSKNSSQQAADSEETSSAIGQISVTVGHNTANANHTNAIASESARA 328 L +S QL + A L++ SS+QAA EE AI ++ + +A TN IA +A Sbjct: 300 LGVSSRQLNATAHALAQASSEQAAAVEEVHGAIASMNQAIQQTGEHARRTNQIAVAAASD 359 Query: 329 ATEGREAVRETLEAMHQIVAKIGVIDDIAYQTNLLALNAAIEAARAGENGRGFAVVANEV 388 A + AV+ T++AM I ++GVIDDIAYQTNLLALNAAIEAARAGE+GRGF+VVA EV Sbjct: 360 ADKSGAAVQTTVDAMRGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAAEV 419 Query: 389 RKLAERSQIAAQEIVSVSDHSVSLAEKAGM-LLEGMLPSIQQTADLVDEISLSARDQNAG 447 RKLAERSQ +A EI ++ SV LAE+ L+EG L I+Q + +++I+LS+R Q G Sbjct: 420 RKLAERSQSSAHEISVIAQQSVELAEQTSQRLVEGTLQGIRQASQQINQITLSSRMQEEG 479 Query: 448 LVQIHSAIGQITQAIQLNAVASPAGLIT 475 + +I A+ Q+ Q NA AS IT Sbjct: 480 VAEIGVAVTQLNDTTQRNAAASEELAIT 507 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 184 bits (466), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 111/286 (38%), Positives = 174/286 (60%), Gaps = 14/286 (4%) Query: 195 IALSLALYTRRIFARQIGGDPREVMRILRQIADGDLTVKFAVERHGQGSVLHSAQRMLEQ 254 I++ +A+ R +Q+GG+P +I +QIADGDLT + S+L + + M + Sbjct: 198 ISILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKTGDNSSLLFAIKNMRDS 257 Query: 255 LFLVLRDVNMAAVTLASASGQLTSAAEQLSKNSSQQAADSEETSSAIGQISVTVGHNTAN 314 L ++ V T+ AS ++ S LS + QQA+ EET+SA+ ++ TV N N Sbjct: 258 LVSIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMTTVKQNADN 317 Query: 315 ANHTNAIASESARAATEGREAVRETLEAM-------HQIVAKIGVIDDIAYQTNLLALNA 367 A + +A ++ A++G E V + + M +IV I VID IA+QTN+LALNA Sbjct: 318 AKQASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQTNILALNA 377 Query: 368 AIEAARAGENGRGFAVVANEVRKLAERSQIAAQEIVSVSDHSV-------SLAEKAGMLL 420 A+EAARAGE GRGFAVVA+EVR LA+RS AA+EI + + SV SL E+AG + Sbjct: 378 AVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAGQTM 437 Query: 421 EGMLPSIQQTADLVDEISLSARDQNAGLVQIHSAIGQITQAIQLNA 466 E ++ S+++ D+V EIS+++++Q+ G+ Q+++AI + +A Q N+ Sbjct: 438 ENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNS 483 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.127 0.335 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,208,062 Number of extensions: 43157 Number of successful extensions: 451 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 276 Number of HSP's successfully gapped: 72 Length of query: 510 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 421 Effective length of database: 1,198,455 Effective search space: 504549555 Effective search space used: 504549555 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)