BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0045.p (193 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309957|ref|YP_003774049.1| chemotaxis histidine kinase [He... 279 9e-77 gi|300312286|ref|YP_003776378.1| signal-transducing histidine ki... 137 8e-34 gi|300313133|ref|YP_003777225.1| CheA-like histidine kinase [Her... 85 3e-18 gi|300311033|ref|YP_003775125.1| chemotaxis histidine kinase [He... 77 1e-15 gi|300312322|ref|YP_003776414.1| two component hybrid sensor his... 73 2e-14 >gi|300309957|ref|YP_003774049.1| chemotaxis histidine kinase [Herbaspirillum seropedicae SmR1] Length = 725 Score = 279 bits (714), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 137/187 (73%), Positives = 157/187 (83%) Query: 1 VTSLSGRGVGMDVVKRNIDALQGEVEIYSNPGQGTMVRIRLPLTLAIIAGFQVVVGGAVF 60 VT LSGRGVGMDVV+RNI+AL GEV I + G+GT+VR+RLPLTLAII+GFQVVVG AVF Sbjct: 533 VTELSGRGVGMDVVRRNIEALHGEVSIDTGRGRGTVVRLRLPLTLAIISGFQVVVGNAVF 592 Query: 61 VIPLDLVVECINLSSHQVHNNVVTLRDEPLPFIPLRELFDLPQRESSRKSLVIVQYGPLR 120 VIPLD+VVECI++ Q +++V +RDEPLPF+PLRELFDLP RE R SLVIVQYGPLR Sbjct: 593 VIPLDMVVECIDMPPQQPGSHIVNVRDEPLPFVPLRELFDLPARERGRNSLVIVQYGPLR 652 Query: 121 AGLLVDNLLGECQAVIKPLGKLFSKVKGLSGSTILGDGRVALILDVPHLIAHTGRMEQAD 180 AGLLVD LLGECQAVIKPLG+LF KVKGLSGSTILGDGRVALILD+ HL+ HT + EQ Sbjct: 653 AGLLVDGLLGECQAVIKPLGRLFGKVKGLSGSTILGDGRVALILDIAHLVHHTQQQEQGS 712 Query: 181 VRRTENR 187 + R Sbjct: 713 AQAYAER 719 >gi|300312286|ref|YP_003776378.1| signal-transducing histidine kinase CheA protein [Herbaspirillum seropedicae SmR1] Length = 697 Score = 137 bits (344), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 81/188 (43%), Positives = 119/188 (63%), Gaps = 7/188 (3%) Query: 1 VTSLSGRGVGMDVVKRNIDALQGEVEIYSNPGQGTMVRIRLPLTLAIIAGFQVVVGGAVF 60 VT +SGRGVGMDVVKRNI A+ G V+I S+ G GT + I LPLTLAI+ G + +G V+ Sbjct: 508 VTDVSGRGVGMDVVKRNILAMGGAVDIRSSKGFGTTISISLPLTLAILDGMSIRIGEEVY 567 Query: 61 VIPLDLVVECINLSSHQV-----HNNVVTLRDEPLPFIPLRELFDLPQR--ESSRKSLVI 113 ++PL VVE + + + V+ +R E LP IPL ++F++ + S+ +VI Sbjct: 568 ILPLGYVVESLQPLAQDIKEISGQGQVLRVRGEYLPLIPLYQIFNIEPSFTDPSQGLVVI 627 Query: 114 VQYGPLRAGLLVDNLLGECQAVIKPLGKLFSKVKGLSGSTILGDGRVALILDVPHLIAHT 173 ++ +A L VD+L+G+ Q V+K L + KV G+SG+TILGDG VALI+DV L+ + Sbjct: 628 LESDGKKAALFVDDLIGQQQIVVKNLESNYRKVAGISGATILGDGGVALIVDVAALLRSS 687 Query: 174 GRMEQADV 181 ++ V Sbjct: 688 RQLNDESV 695 >gi|300313133|ref|YP_003777225.1| CheA-like histidine kinase [Herbaspirillum seropedicae SmR1] Length = 744 Score = 85.1 bits (209), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 9/185 (4%) Query: 1 VTSLSGRGVGMDVVKRNIDALQGEVEIYSNPGQGTMVRIRLPLTLAIIAGFQVVVGGAVF 60 V++L+GRG+GMDVV+ + AL G + ++S PGQG + LPL+LA+ + G F Sbjct: 552 VSALAGRGIGMDVVRSEVAALGGWMRVHSQPGQGVQFTLYLPLSLAVQHVCLLRHGQQHF 611 Query: 61 VIPLDLVVECINLSSHQVHNNVVTLRDEP----LPFIPLRELFD---LPQRESSRKSLV- 112 IP LV + L Q + E L P L D P E S + V Sbjct: 612 AIPSMLVDSIVQLRGPQARQALAERSLEHQGSRLALHPWHCLLDEAPEPAGEGSDSAYVL 671 Query: 113 IVQYGPLRAGLLVDNLLGECQAVIKPLGKLFSKVKGLSGSTILGDGRVALILDVPHLIAH 172 +++ +L D++ G + V+KP+G + + G+ G+T+LGDG++ LI++ P L+A Sbjct: 672 LIKRDDGLMAVLADHVSGNREVVVKPVGPQLATLAGVVGATVLGDGQIVLIIN-PLLLAG 730 Query: 173 TGRME 177 GR + Sbjct: 731 AGRTD 735 >gi|300311033|ref|YP_003775125.1| chemotaxis histidine kinase [Herbaspirillum seropedicae SmR1] Length = 837 Score = 76.6 bits (187), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 95/178 (53%), Gaps = 8/178 (4%) Query: 1 VTSLSGRGVGMDVVKRNIDALQGEVEIYSNPGQGTMVRIRLPLTLAIIAGFQVVVGGAVF 60 V+ LSGRGVGMDVV+ ++ + G + ++S G+GT ++I LPL++A+ + G +F Sbjct: 660 VSDLSGRGVGMDVVRNAVEKVNGSLALHSVSGKGTRLQISLPLSMAVTKVMIIESDGQLF 719 Query: 61 VIPLDLVVECINLSSHQVH----NNVVTLRDEPLPFIPLRELFDLPQRESSRK----SLV 112 +P++ V+E + + +H + + LR L + ++ + + + +++ Sbjct: 720 GVPMEHVMETVRVPRSSLHFANSSAKMVLRGHILGLKGINQILGIAAEQKTNADGEVAVL 779 Query: 113 IVQYGPLRAGLLVDNLLGECQAVIKPLGKLFSKVKGLSGSTILGDGRVALILDVPHLI 170 +V+ G GL++D+ + KPL + + SGS ++GDG V ++L+ + Sbjct: 780 VVRVGGQSVGLVIDDFRETVDVIQKPLLGILGGLSLYSGSALMGDGSVLMVLNTREMF 837 >gi|300312322|ref|YP_003776414.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 775 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 12/192 (6%) Query: 1 VTSLSGRGVGMDVVKRNIDALQGEVEIYSNPGQGTMVRIRLPLTLAIIAGFQVVVGGAVF 60 VT +SGRGVG+DVV + ++G + I + GQG+ ++LPLTL++I V + G + Sbjct: 449 VTEISGRGVGLDVVADMLKQVRGTIRITTQAGQGSRFLMQLPLTLSVIRSLLVDIAGEPY 508 Query: 61 VIPLDLVVECINLSSHQVHN----NVVTLRDEPLPFIPLRELFDLPQRESSRKSLVIVQY 116 PL V + L + + + + + ++ Q S S+ +V Sbjct: 509 AFPLAYVNRTLRLPAEALQTLEGYQHFSHGGRQVGLVSAHQVLQKGQWRSRDGSVCVVVI 568 Query: 117 GPLR--AGLLVDNLLGECQAVIKPLGKLFSKVKGLSGSTILGDGRVALILDVPHL----- 169 G GL VD LGE V++PL K+ + ++ DG LILDV + Sbjct: 569 GEQEHTYGLAVDAFLGERMLVVQPLDPRLGKIADVLAGALMEDGTPLLILDVADMLRTVE 628 Query: 170 -IAHTGRMEQAD 180 + +GR++ D Sbjct: 629 KLTSSGRLQTVD 640 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.141 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 539,963 Number of extensions: 20410 Number of successful extensions: 105 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 6 Length of query: 193 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 113 Effective length of database: 1,241,070 Effective search space: 140240910 Effective search space used: 140240910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)