BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0178.0042.p (123 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309955|ref|YP_003774047.1| two-component system sensor his... 199 6e-53 gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas... 120 3e-29 gi|300311785|ref|YP_003775877.1| chemotaxis response regulator C... 96 1e-21 gi|300311034|ref|YP_003775126.1| chemotaxis response regulator p... 94 3e-21 gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas... 77 4e-16 >gi|300309955|ref|YP_003774047.1| two-component system sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 122 Score = 199 bits (506), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 94/120 (78%), Positives = 103/120 (85%) Query: 4 KTILIVDDSFSLRQTISIALKGAGYDVVEAVDGRDALNKLDGRKYNLIISDVNMPNLDGL 63 K ILIVDDSFSLRQTIS ALK AGY V EA DG+ AL LDGRK+NL+ISD+NMP+LDGL Sbjct: 3 KNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLDGL 62 Query: 64 SFVREAKQNPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKPFLPPVLLDAVAKLVTP 123 SFVRE KQ P YKFTPV+MLTTES + RKQEGKA G+RAWVHKPF PPVLLDAVAKL+ P Sbjct: 63 SFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLILP 122 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 120 bits (302), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 58/119 (48%), Positives = 80/119 (67%) Query: 3 AKTILIVDDSFSLRQTISIALKGAGYDVVEAVDGRDALNKLDGRKYNLIISDVNMPNLDG 62 +KTIL VDDS SLRQ + +LK AGY+V EAVDG DAL K + ++L+++D NMP +DG Sbjct: 2 SKTILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMDG 61 Query: 63 LSFVREAKQNPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKPFLPPVLLDAVAKLV 121 L+ +R ++ +Y P+LMLTTE D K +GKA G W+ KPF P L + V K++ Sbjct: 62 LTLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120 >gi|300311785|ref|YP_003775877.1| chemotaxis response regulator CheY [Herbaspirillum seropedicae SmR1] Length = 122 Score = 95.5 bits (236), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 51/117 (43%), Positives = 70/117 (59%), Gaps = 1/117 (0%) Query: 6 ILIVDDSFSLRQTISIALKGAGYDVVEAVDGRDALNKLDGR-KYNLIISDVNMPNLDGLS 64 IL+VDDS ++R + LK G DV AVDGRD L+KL G L++SDVNMPN+DGL+ Sbjct: 4 ILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKLKGDPAIKLVVSDVNMPNMDGLT 63 Query: 65 FVREAKQNPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKPFLPPVLLDAVAKLV 121 + + ++MLTTE+ K+ GKA G++ W+ KPF +L KLV Sbjct: 64 MAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLV 120 >gi|300311034|ref|YP_003775126.1| chemotaxis response regulator protein [Herbaspirillum seropedicae SmR1] Length = 126 Score = 94.0 bits (232), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%) Query: 2 SAKTILIVDDSFSLRQTISIALKGAGYDVVEAVDGRDALNKLD-GRKYNLIISDVNMPNL 60 ++K+I +VDDS ++ ++ L+ AG+ V A DG AL K+ G K +L+I+D+NMPN+ Sbjct: 3 TSKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNM 62 Query: 61 DGLSFVREAKQNPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKP 107 DGL +R + P ++F P+L LTTES ++ EGK G W+ KP Sbjct: 63 DGLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKP 109 >gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 131 Score = 77.0 bits (188), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 1/116 (0%) Query: 6 ILIVDDSFSLRQTISIALKGAGY-DVVEAVDGRDALNKLDGRKYNLIISDVNMPNLDGLS 64 L+VDD ++R+ + LK GY +V EA DG AL KL +++ ++SD NMPN+DGL+ Sbjct: 8 FLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNMPNMDGLT 67 Query: 65 FVREAKQNPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKPFLPPVLLDAVAKL 120 ++E +++P PVLM+T E+ G +V KPF L + + K+ Sbjct: 68 MLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKI 123 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 363,083 Number of extensions: 13467 Number of successful extensions: 149 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 22 Length of query: 123 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 49 Effective length of database: 1,269,480 Effective search space: 62204520 Effective search space used: 62204520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)