BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0041.p
         (386 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309954|ref|YP_003774046.1| methyl-accepting chemotaxis pro...   318   4e-88

>gi|300309954|ref|YP_003774046.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 301

 Score =  318 bits (816), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 170/284 (59%), Positives = 211/284 (74%), Gaps = 2/284 (0%)

Query: 105 LPVLVQAVVPAWRNNVQLARTQTQEAIDKLTQRFVGIHQRLGGAVSLAEGGKNGDVLQVI 164
           L  L++ V+P W+ NVQLAR QTQ AID LT RFVGIH+RL G +  A  G  G++LQ +
Sbjct: 18  LDGLLREVLPVWQGNVQLARAQTQSAIDSLTARFVGIHERLEGTLDPARHGAGGEILQTV 77

Query: 165 QNAAQQLGGIANALEQVLTTRDALLRKIETLNQHNEDIRQLGLQVEQIAGRTGVTDLFSD 224
           Q+AA QLGGIA ALE +L++R AL  +++TL   N++IR+L  Q EQ+AG+TGVTDL S 
Sbjct: 78  QHAADQLGGIATALEGMLSSRQALASRLDTLLAANDEIRRLAQQNEQLAGQTGVTDLLSS 137

Query: 225 QASWTELAARSAEAGRQIVGKTKAVQQQIQATHLSANQLDADAGRMVDDSRMVIDSVIAD 284
           + SW ELA RSAE  RQI  + K+ +QQIQA   ++ +  A  G +V+ SR VID VIAD
Sbjct: 138 EQSWQELAERSAENSRQIAARAKSARQQIQAVLGASGEAPAGEGEIVEQSRAVIDQVIAD 197

Query: 285 FRQSALKLSGTVGQLEEENREVDQEVCDILVNLQFQDRISQILDHVQLDMVKL--TGMVA 342
           FRQSA+KLS TV QLE+E+REVD+EVCDILV+LQFQDRISQILDHVQ D+ +L       
Sbjct: 198 FRQSAMKLSSTVEQLEDESREVDREVCDILVHLQFQDRISQILDHVQHDIARLRAAAAED 257

Query: 343 SAASLPSGAAWLSDLEKTYTTQEQRQVHAGQQADKSLQSQVDFF 386
           + A+LPS   WL+DLEKTYTTQEQRQVHAGQQ   +  SQVDFF
Sbjct: 258 APAALPSAQQWLADLEKTYTTQEQRQVHAGQQGGAATASQVDFF 301


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.130    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,082,384
Number of extensions: 39988
Number of successful extensions: 216
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,207,925
Effective search space: 361169575
Effective search space used: 361169575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)