BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0039.p
         (213 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309953|ref|YP_003774045.1| deoxynucleoside kinase [Herbasp...   243   1e-65

>gi|300309953|ref|YP_003774045.1| deoxynucleoside kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  243 bits (619), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/212 (57%), Positives = 152/212 (71%)

Query: 1   MDLDSYHYIVIEGPIGVGKTTLARKLAQRLDVQSVLEQPQENPFLEKFYRDAGRYALQTQ 60
           M+L+SY YI I+GPIG GKT+LA +LA     Q++LEQP+ NPFL +FYRDA R+A QTQ
Sbjct: 1   MELESYRYIAIDGPIGAGKTSLATRLATLWGAQALLEQPEGNPFLAEFYRDAARHAFQTQ 60

Query: 61  MFFLFQRIQQLQELAQSDLFNTRFVGDFLLEKDPLFARLTLADEELKLYEQLYQHLRTHA 120
            FFL QR+ QLQ      L   RF+ DF+LEK+ LFA+LTLA +EL LY+ L++ L+   
Sbjct: 61  AFFLLQRMGQLQAPLDPALAEGRFIADFMLEKNILFAQLTLAGDELALYDALHRQLQPQV 120

Query: 121 VQPDLVIYLQAPVDTLIERIRKRGIPMEASISHDYLQRLGDSYSRFFYNYDAAPLLIVNN 180
             PDLVI+LQAP + L  RI  RGI ME +IS DYLQRL + YS FFY+Y+ AP+L VN 
Sbjct: 121 RIPDLVIHLQAPPEVLQARIGARGIAMEQAISLDYLQRLSECYSHFFYHYEDAPVLTVNT 180

Query: 181 EHMNMADNDEDFELLLSHIAEMRGKRAFLNRG 212
           EH++ A ND D  +LL HI +M GKRAFLN G
Sbjct: 181 EHLDPAHNDADLAILLQHIQQMHGKRAFLNHG 212


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 618,836
Number of extensions: 24182
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 132
Effective length of database: 1,236,335
Effective search space: 163196220
Effective search space used: 163196220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)