BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0032.p
         (372 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309948|ref|YP_003774040.1| ferrochelatase [Herbaspirillum ...   580   e-167

>gi|300309948|ref|YP_003774040.1| ferrochelatase [Herbaspirillum
           seropedicae SmR1]
          Length = 369

 Score =  580 bits (1496), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 282/373 (75%), Positives = 324/373 (86%), Gaps = 5/373 (1%)

Query: 1   MSFRKEPPYIHGSNMQAQTAVVLVNLGTPDAPTARAVRRYLKQFLSDPRVVEIPRAIWWF 60
           M+FR EP + HGS+  A TA+VLVNLGTPDAP A A+RRYL QFLSDPRVVEIPRA+WWF
Sbjct: 1   MAFRTEPKHTHGSS--ASTAIVLVNLGTPDAPNAPALRRYLGQFLSDPRVVEIPRAVWWF 58

Query: 61  ILNGVILPFRSGKSAEKYASIWDAEGSPLRLNTERQAALLRARLXLLERGH-RVHVTHAM 119
           ILNGVILPFRS KSAEKYASIW  +GSPLR++TERQAA L A+L    RGH ++ V HAM
Sbjct: 59  ILNGVILPFRSSKSAEKYASIWTEQGSPLRVHTERQAAALGAQLA--ARGHHQLQVVHAM 116

Query: 120 RYGSPAVPDVLDELKAQGCDRILILPAYPQYSGTTTASIFDAVFQHFAQVRNIPELRLIK 179
           RYGSP++P VLD+LK QGC RIL+LPAYPQYSGTTTASIFDAVF H+ +VRNIPELRLI+
Sbjct: 117 RYGSPSLPQVLDQLKQQGCTRILVLPAYPQYSGTTTASIFDAVFDHYRKVRNIPELRLIR 176

Query: 180 HYHDHDGYIQALKRSVQAHWDANGQPDKLVMSFHGVPKRTLLLGDPYHCECYKTARLLAE 239
           +YHD DGYIQAL++SV  HW+ NG+PDKLVMSFHGVPKRTL LGDPYHCECYKTARLLA+
Sbjct: 177 NYHDQDGYIQALRQSVLDHWEVNGRPDKLVMSFHGVPKRTLELGDPYHCECYKTARLLAQ 236

Query: 240 ALGLSEADYVVTFQSRFGKAEWLQPYTAPTLQELARQGVQRVDVMCPGFTSDCLETLEEI 299
           +LGL++  Y+VTFQSRFGKAEWLQPYTAPT+Q L RQGV+R+DVMCPGFTSDCLETLEEI
Sbjct: 237 SLGLNDEQYLVTFQSRFGKAEWLQPYTAPTVQALGRQGVRRIDVMCPGFTSDCLETLEEI 296

Query: 300 AMEAKAEFLHAGGREFHFIPCLNDAPAWGQGMMEIAEQHLIGWPTLAGAAQREEEQKQAA 359
           AME K EFLHAGG+EFHFIPCLN++PAW  GM+EI EQHL GWPT++ AA RE+  + AA
Sbjct: 297 AMEVKDEFLHAGGKEFHFIPCLNESPAWIAGMVEIVEQHLAGWPTMSNAAAREQMAQDAA 356

Query: 360 ISAEQARRHGATQ 372
           ISAE+A+  GA Q
Sbjct: 357 ISAERAKALGAPQ 369


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,166,553
Number of extensions: 46997
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 285
Effective length of database: 1,207,925
Effective search space: 344258625
Effective search space used: 344258625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)