BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0031.p
         (294 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309947|ref|YP_003774039.1| DNA repair protein [Herbaspiril...   389   e-109

>gi|300309947|ref|YP_003774039.1| DNA repair protein [Herbaspirillum
           seropedicae SmR1]
          Length = 548

 Score =  389 bits (1000), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/231 (83%), Positives = 217/231 (93%)

Query: 1   LRELGELLVDIHGQHAHQSLLKADAQRQLLDSQAGLLEEAKAVAAAYKTWRALARQREEF 60
           LRE+GE+LVDIHGQHAHQSL+KADAQRQLLDSQAGLLE+A+ VAA+YKTWRALARQRE+F
Sbjct: 116 LREVGEMLVDIHGQHAHQSLMKADAQRQLLDSQAGLLEQAREVAASYKTWRALARQREQF 175

Query: 61  EINAKNVLLERERLEWQVSELEKLAVKPGEWSDISNEHSRLSHAASLIDGAQEALSAISE 120
           E +A+NVLLERERLEWQV+EL KLAVKPGEW++IS EHSRLSHAA+LI GAQEAL  ISE
Sbjct: 176 EQDARNVLLERERLEWQVAELHKLAVKPGEWAEISTEHSRLSHAAALISGAQEALGVISE 235

Query: 121 SDSPILSQLSSLTQKLGKLTDVDAALKPVMDALEPAQIQLQEAVYALNDYLGRVELDPAR 180
           S+SPILSQLSS+TQKL KL DVD ALKPV+DALEPAQIQLQEAVYALNDYLGRVELDPAR
Sbjct: 236 SESPILSQLSSITQKLTKLVDVDTALKPVLDALEPAQIQLQEAVYALNDYLGRVELDPAR 295

Query: 181 LQQVEGRLEAIHSTARKFRVAPDDLPQEHAKLAEELKQLADASDLDALRAK 231
           LQ+VE RLEAIHSTARKF V PD+LP+E+ KL+E+LKQLADASDLDALRA+
Sbjct: 296 LQEVEERLEAIHSTARKFHVQPDELPEEYRKLSEQLKQLADASDLDALRAQ 346


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 778,905
Number of extensions: 27735
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 210
Effective length of database: 1,222,130
Effective search space: 256647300
Effective search space used: 256647300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)