BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0029.p
         (88 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309946|ref|YP_003774038.1| inorganic polyphosphate/ATP-NAD...   105   6e-25

>gi|300309946|ref|YP_003774038.1| inorganic polyphosphate/ATP-NAD
          kinase [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  105 bits (263), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/66 (74%), Positives = 59/66 (89%)

Query: 1  VQAATPKTIAIVGKYHAAGIAQSLSDIAAFLEAHGHTIVFEAETAQNIALEGYDAMSPEQ 60
          VQAA PKT+AIVGK+ A GIAQ LSDIA FLE+HGHT+VFEAETA+N+AL+GYD+++ EQ
Sbjct: 8  VQAAVPKTVAIVGKFQAVGIAQILSDIAVFLESHGHTVVFEAETAENVALQGYDSLTTEQ 67

Query: 61 IGQFAD 66
          IGQ AD
Sbjct: 68 IGQHAD 73


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.128    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 204,801
Number of extensions: 5995
Number of successful extensions: 25
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 88
Length of database: 1,619,870
Length adjustment: 58
Effective length of query: 30
Effective length of database: 1,345,240
Effective search space: 40357200
Effective search space used: 40357200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)