BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0017.p
         (318 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309937|ref|YP_003774029.1| cAMP phosphodiesterase [Herbasp...   447   e-127
gi|300309459|ref|YP_003773551.1| 50S ribosomal protein L2 [Herba...    93   4e-20

>gi|300309937|ref|YP_003774029.1| cAMP phosphodiesterase
           [Herbaspirillum seropedicae SmR1]
          Length = 273

 Score =  447 bits (1150), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/274 (78%), Positives = 236/274 (86%), Gaps = 3/274 (1%)

Query: 1   MILCQISDLHIKAQGKKSYRVVDTAESLRRCVAQVNRLKQRPDAVVFTGDLVDFGLADEY 60
           MIL QISDLHIK  GKKSYRVVDTAESLRRCVAQVN LKQRPDA+V TGDLVDFG   EY
Sbjct: 1   MILGQISDLHIKTDGKKSYRVVDTAESLRRCVAQVNGLKQRPDALVITGDLVDFGKPSEY 60

Query: 61  AVLRELLAPLTMPYYLLPGNHDERGALRRAFPDHGYLQGAADDARIEYVIEDHPLRIVTL 120
           A LRELLAPL MPYYLLPGNHDER ALR AFPDH YLQ   +  RIEYVIEDHP+RI+ L
Sbjct: 61  ACLRELLAPLAMPYYLLPGNHDERNALRAAFPDHAYLQQGGE--RIEYVIEDHPVRIIAL 118

Query: 121 DTVIPRSSKGELAPASMDWLEQVLSTQPQRPTVIAMHHPPFTTGIGHMDDIGLINPQLLE 180
           DTVIPR S G L+P S+ WL++VL+ Q QRPTVIAMHHPPFTTGIGHMDD+GL +PQ LE
Sbjct: 119 DTVIPRQSGGALSPQSLQWLDEVLAQQAQRPTVIAMHHPPFTTGIGHMDDMGLADPQALE 178

Query: 181 PVVRRHPQVERVICGHLHRSIQTRFGGTMASTCPGVSHQVVLDLDPQAPSQFVMEPPGFQ 240
            VVR+HPQVER++CGHLHRSIQ RFGGT+A+TCPGVSHQV LDLD QAPS FVMEPPGFQ
Sbjct: 179 AVVRKHPQVERILCGHLHRSIQRRFGGTLATTCPGVSHQVQLDLDAQAPSCFVMEPPGFQ 238

Query: 241 LHWW-ERNTGLISHTAYVGEFDGPYPFYDGDQLI 273
           LHWW E    L+SHTA++GEF+GPYPFYDGD+LI
Sbjct: 239 LHWWDEAARSLVSHTAFIGEFEGPYPFYDGDELI 272


>gi|300309459|ref|YP_003773551.1| 50S ribosomal protein L2
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/51 (86%), Positives = 46/51 (90%)

Query: 263 PYPFYDGDQLISGSEAPIKAGNSLPIRNIPVGTTIHCVEMLPGKGAQIART 313
           P     GDQLISGSEAPIK+GN+LPIRNIPVGTTIHCVEMLPGKGAQIART
Sbjct: 107 PKGVSVGDQLISGSEAPIKSGNTLPIRNIPVGTTIHCVEMLPGKGAQIART 157


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,139,085
Number of extensions: 53425
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 2
Length of query: 318
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,217,395
Effective search space: 283653035
Effective search space used: 283653035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)