BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0016.p
         (84 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans...    80   3e-17

>gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 361

 Score = 80.1 bits (196), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 52/74 (70%), Gaps = 1/74 (1%)

Query: 1   MFRPEDVEIVPLDTAGAEIF-GDVMSTFFMGDRTRLLVDVGTEMPVIVETRRRGVWHAGE 59
           +FRPEDVE++ +  A A    G +++TFF+GDRTR  +++G E PVI ET RRG W AG+
Sbjct: 279 LFRPEDVEVIDITEADAHCLRGKLINTFFLGDRTRFEIEIGAERPVIAETSRRGWWEAGQ 338

Query: 60  HIGLRVPEHAVMQL 73
            I +RVP  A++ +
Sbjct: 339 QIAIRVPATALVTM 352


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 281,868
Number of extensions: 10502
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 84
Length of database: 1,619,870
Length adjustment: 54
Effective length of query: 30
Effective length of database: 1,364,180
Effective search space: 40925400
Effective search space used: 40925400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 123 (52.0 bits)