BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0014.p
         (344 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans...   448   e-127
gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans...   219   3e-58
gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans...   207   1e-54
gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp...   206   2e-54
gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra...   203   2e-53

>gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 361

 Score =  448 bits (1152), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/351 (64%), Positives = 269/351 (76%), Gaps = 34/351 (9%)

Query: 14  NSSLSIKLLQCAKTFGSGAPALEPIDLEIHPGETLVLLGPSGCGKTTTLX---------- 63
             ++SI+L QCAK+F +G  AL+P+DL+IHPGETLVLLGPSGCGKTTTL           
Sbjct: 5   QEAVSIRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDE 64

Query: 64  ----------------EKRGVGMVFQNYALFPNMTVGENIAYGMKIRKLPAAERAARIDA 107
                           EKRGVGMVFQNYALFPNM+VGENIAYGMKIRK+ A ERA R++ 
Sbjct: 65  GGRVLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAERVER 124

Query: 108 LLDMVHLQGLGHRRIDQLSGGQKQRVALARALAVEPRVLLLDEPLTALDAKLRETLRADL 167
           LL+MVHLQGL HRR+DQLSGGQKQRVALARALA+EPRVLLLDEPLTALDAKLRE +R+DL
Sbjct: 125 LLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDL 184

Query: 168 NQLLRKLGITAIYVTHDQGEAMALGDRVVVMERGKIAQIGTPQDIYYRPASEFVADFIGT 227
           N+LLR LGITAIYVTHDQGEAMALGDR+VVMERGKI+QIGTPQ+IYY PA++FVA+FIG 
Sbjct: 185 NKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFIGA 244

Query: 228 MNRVSGVTRVGHLQIPAGIVPLANVKPD----RQATAMFRPEDVEIVPLDTAGAEIF-GD 282
           MNRV G+     LQ+P G +PL    PD    + A A+FRPEDVE++ +  A A    G 
Sbjct: 245 MNRVDGIVAGDRLQLPTGTLPL---PPDAVAGQPAQALFRPEDVEVIDITEADAHCLRGK 301

Query: 283 VMSTFFMGDRTRLLVDVGTEMPVIVETRRRGVWHAGEHIGLRVPEHAVMQL 333
           +++TFF+GDRTR  +++G E PVI ET RRG W AG+ I +RVP  A++ +
Sbjct: 302 LINTFFLGDRTRFEIEIGAERPVIAETSRRGWWEAGQQIAIRVPATALVTM 352


>gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 362

 Score =  219 bits (557), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 127/316 (40%), Positives = 188/316 (59%), Gaps = 45/316 (14%)

Query: 28  FGSGA---PALEPIDLEIHPGETLVLLGPSGCGKTTTL---------------------- 62
           +G+GA   P L+ + +E+  GE + LLGPSG GKTT L                      
Sbjct: 13  YGTGAHANPILKGVSMELQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGAIDIGKRRVF 72

Query: 63  ---------XEKRGVGMVFQNYALFPNMTVGENIAYGMKIRKLPAAERAARIDALLDMVH 113
                     E+R +G+VFQ+YAL+P+ TV +N+AYG+K+RK P+ E A R+ A+L  + 
Sbjct: 73  DGARNFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSGEIATRVKAVLSQLG 132

Query: 114 LQGLGHRRIDQLSGGQKQRVALARALAVEPRVLLLDEPLTALDAKLRETLRADLNQLLRK 173
           L  LG R   QLSGGQ+QRVA+ARAL   P+V+LLDEPL+ LDAKLRE  RA L +L+ +
Sbjct: 133 LGHLGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVR 192

Query: 174 LGITAIYVTHDQGEAMALGDRVVVMERGKIAQIGTPQDIYYRPASEFVADFIGTMNRVSG 233
           LG++A+ VTHDQGEAMA+ DR++++  G+I Q GTPQ +Y  P + F A+F+G+ N+++ 
Sbjct: 193 LGLSALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQAPNTLFTAEFMGSNNKLAA 252

Query: 234 --VTRVGH---LQIPAGIVPL-----ANVKPDRQATAMFRPEDVEIVPLDTAGAEIFGDV 283
             ++R G    +++  G         ++V+P  Q T + R E V I   + +   I   +
Sbjct: 253 EVLSREGERVTVKLDGGTAVATLRGRSDVRPGEQLTGIIRVEQVRISG-EASDNAIRLPL 311

Query: 284 MSTFFMGDRTRLLVDV 299
            +  ++GDR   L  V
Sbjct: 312 STCMYLGDRWECLFKV 327


>gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score =  207 bits (526), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/340 (36%), Positives = 178/340 (52%), Gaps = 39/340 (11%)

Query: 6   HAHSRTPMNSSLSIKLLQCAKTFGSGAPALEPIDLEIHPGETLVLLGPSGCGKTTTLX-- 63
            A   +   S + ++     KT+      ++ +DL+I  GE L LLGPSG GKTT L   
Sbjct: 9   QAAQESVQQSDVLVQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLMML 68

Query: 64  -----------------------EKRGVGMVFQNYALFPNMTVGENIAYGMKIRKLPAAE 100
                                   KR +GMVFQNYALFP+MT+ +N+AY + +RK+  A 
Sbjct: 69  AGFEFPTGGEIRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMDRAT 128

Query: 101 RAARIDALLDMVHLQGLGHRRIDQLSGGQKQRVALARALAVEPRVLLLDEPLTALDAKLR 160
           R A++   LDMV +   G R   QLSGGQ+QRVALAR L  +P+++L+DEPL ALD +LR
Sbjct: 129 REAKVKQALDMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDKQLR 188

Query: 161 ETLRADLNQLLRKLGITAIYVTHDQGEAMALGDRVVVMERGKIAQIGTPQDIYYRPASEF 220
           E ++ +L  L ++LG+T +YVTHDQ EA+ + DRV V ++G I Q+    ++Y  P ++F
Sbjct: 189 EHMQLELKALHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQF 248

Query: 221 VADFIGTMNRVSGVTRVGHLQIPAGIVPLAN-----------VKPDRQATAMFRPEDVEI 269
           VA+FIG  NR  G   V  +Q     V L +               +  TA  RPE + +
Sbjct: 249 VANFIGDNNRFKG--SVESVQGEHCTVRLTDGAALTGLNVHRAHAGQSITACVRPERIRL 306

Query: 270 VPLDTAG-AEIFGDVMSTFFMGDRTRLLVDVGTEMPVIVE 308
               +A    I   +    + GD  R+   V  +    V+
Sbjct: 307 AAGGSAEPNSIRASIAGLIYFGDHVRVRCTVAGQEDCFVK 346


>gi|300311547|ref|YP_003775639.1| ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score =  206 bits (525), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/314 (40%), Positives = 188/314 (59%), Gaps = 34/314 (10%)

Query: 11  TPMNSSLSIKLLQCAKTFGSGAPALEPIDLEIHPGETLVLLGPSGCGKTTTLX------- 63
           T  ++++ + + +  K FGS   AL+ + LE+  GE + LLGPSGCGKTT L        
Sbjct: 5   TEEDAAVFLSVREVEKRFGSFT-ALDRVSLEVRRGEMVCLLGPSGCGKTTLLRTIAGLER 63

Query: 64  ------------------EKRGVGMVFQNYALFPNMTVGENIAYGMKIRKLPAAERAARI 105
                             + R  G++FQ+YALFPN++V +N+AYG+   ++   ++  R+
Sbjct: 64  QDSGRLHADGRDISQLPPQARDYGILFQSYALFPNLSVADNVAYGLG--RMSRQQKRERV 121

Query: 106 DALLDMVHLQGLGHRRIDQLSGGQKQRVALARALAVEPRVLLLDEPLTALDAKLRETLRA 165
             +L MV L G   +   QLSGGQ+QRVALARALA  P +LLLDEPL+ALDA++RE L+ 
Sbjct: 122 TEMLSMVGLDGSQDKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQL 181

Query: 166 DLNQLLRKLGITAIYVTHDQGEAMALGDRVVVMERGKIAQIGTPQDIYYRPASEFVADFI 225
           ++ +L ++  IT + VTHDQ EAM + DR+ VM+ G+I Q GTP+ IY RPA+ FVADFI
Sbjct: 182 EIRRLQKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPEQIYRRPATPFVADFI 241

Query: 226 GTMNRVSGVTRVGHLQIPAGIVPLANVKP---DRQATAMF-RPEDVEIVPLDTAGAEIFG 281
           G  N +   TR+   Q+  G + L  ++P   DR +  +F RPE V++   ++       
Sbjct: 242 GQANWLP-FTRLSGSQVAVGGLHL-EIQPDESDRASGRLFCRPEAVQLFSDESCANRFLA 299

Query: 282 DVMSTFFMGDRTRL 295
            V+   ++GDR RL
Sbjct: 300 RVVDRIYLGDRYRL 313


>gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score =  203 bits (516), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 113/246 (45%), Positives = 153/246 (62%), Gaps = 30/246 (12%)

Query: 18  SIKLLQCAKTFGSGAPALE---PIDLEIHPGETLVLLGPSGCGKTTTLX----------- 63
           +I L Q  KT+G+G  A++    ID EI  GE +V++GPSGCGK+T L            
Sbjct: 3   AIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEISSG 62

Query: 64  --------------EKRGVGMVFQNYALFPNMTVGENIAYGMKIRKLPAAERAARIDALL 109
                         ++R + MVFQNYAL+P+MTV +N+AYG+KI+ L  +E  AR+    
Sbjct: 63  QIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQRAA 122

Query: 110 DMVHLQGLGHRRIDQLSGGQKQRVALARALAVEPRVLLLDEPLTALDAKLRETLRADLNQ 169
            ++ L  L  R   QLSGGQ+QRVA+ RA+  +P V L DEPL+ LDAKLR  +R ++ +
Sbjct: 123 AILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEIQK 182

Query: 170 LLRKLGITAIYVTHDQGEAMALGDRVVVMERGKIAQIGTPQDIYYRPASEFVADFIGT-- 227
           L   L  T++YVTHDQ EAM LG R++VM RG   QIGTP ++Y RPA+ FVA FIG+  
Sbjct: 183 LHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGSPP 242

Query: 228 MNRVSG 233
           MN + G
Sbjct: 243 MNLLQG 248


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,129,170
Number of extensions: 49906
Number of successful extensions: 624
Number of sequences better than 1.0e-08: 129
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 138
Length of query: 344
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 258
Effective length of database: 1,212,660
Effective search space: 312866280
Effective search space used: 312866280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)