BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0013.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309935|ref|YP_003774027.1| spermidine/putrescine ABC trans...   446   e-127

>gi|300309935|ref|YP_003774027.1| spermidine/putrescine ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score =  446 bits (1148), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/267 (85%), Positives = 241/267 (90%), Gaps = 2/267 (0%)

Query: 1   MKNSLRFYLQLAFTLLVCAFLIVPVVLSVLAGVTENFFVGLSSGFTLRWVAQVWDTYQMT 60
           M+N  RFYLQL FTLLVCAFL+VPVVLS+LAGVTENFFVGLSSG TLRWVAQVW+ YQ T
Sbjct: 1   MQNRFRFYLQLGFTLLVCAFLVVPVVLSMLAGVTENFFVGLSSGLTLRWVAQVWEMYQPT 60

Query: 61  IWRSVAIALACLAVTLVVGVPLAYMLARHQG--XRLARVFEELLMMPVAVPGLATALALI 118
           IWRS+ IALACLAVTL  GVPLAYMLAR++G   RLARV EELLMMPVAVPGLATALALI
Sbjct: 61  IWRSLFIALACLAVTLAAGVPLAYMLARYRGGNSRLARVIEELLMMPVAVPGLATALALI 120

Query: 119 MAYGQYRAFRGSLLFILVGHVLFTLPFMVRPVLAVMQSSQLAVLEEAAASLGAGIRQRFF 178
           MAYGQYR FR SL FILVGHV+FTLPFMVRPVLAVMQSSQLA LEEAAASLGAG  +RFF
Sbjct: 121 MAYGQYREFRASLWFILVGHVIFTLPFMVRPVLAVMQSSQLAQLEEAAASLGAGRMRRFF 180

Query: 179 GVVIPNAASGILAGALMVVTLSIGEFNITWMLHTPLTMTLPVGLADAYASMRLEVGSAYT 238
           G+VIPNAASGILAGALMVVTLSIGEFNITWMLHTPLT TLPVGLADAYASMRLEVGSAYT
Sbjct: 181 GIVIPNAASGILAGALMVVTLSIGEFNITWMLHTPLTQTLPVGLADAYASMRLEVGSAYT 240

Query: 239 LIFLLMIVPLLVAMQWATQTTRTRVRL 265
           LIF  MI+PLL+ MQWATQ TR +V L
Sbjct: 241 LIFFFMIIPLLIGMQWATQATRKKVSL 267


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.332    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 798,584
Number of extensions: 33252
Number of successful extensions: 244
Number of sequences better than 1.0e-08: 8
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 8
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 129 (54.3 bits)