BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0011.p
         (281 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309933|ref|YP_003774025.1| Fe3+ ABC transporter periplasmi...   419   e-118
gi|300309932|ref|YP_003774024.1| transcription regulator protein...    83   2e-17
gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmi...    65   7e-12

>gi|300309933|ref|YP_003774025.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score =  419 bits (1076), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 198/232 (85%), Positives = 219/232 (94%)

Query: 50  WNDVPAGLKDPEGYWTTIHSGTMGLMVNVDALKGKPMPRSWQDLLKPEYKGLIGYLDPAS 109
           WND+P GLKDP+GYW TIHSGTMG+MVNVDALKGKP+P+SW DL KPEYKGLIGYLDPAS
Sbjct: 104 WNDIPNGLKDPDGYWFTIHSGTMGIMVNVDALKGKPVPKSWADLQKPEYKGLIGYLDPAS 163

Query: 110 AFVGYVGAVAVNQALGGTLDNFTPGINYFKALQKNQPIVPKQTSYARLISGEIPILFGYD 169
           AFVGYVGAVA+NQALGGTLD+F+P I YFK LQKNQPIVPKQTSYARLISGEIPIL GYD
Sbjct: 164 AFVGYVGAVAINQALGGTLDDFSPAIGYFKNLQKNQPIVPKQTSYARLISGEIPILLGYD 223

Query: 170 FDAYRARYKDKANVAFVIPAEGSVTVPYVVSLVKNGPNQANAKKVLDFLLSNEGQAIWAN 229
           FDAYRA+YKD ANVAFVIP+EG+VTVPYVV+LVKN P+QA AKKVLDFLLS++GQAIWAN
Sbjct: 224 FDAYRAKYKDHANVAFVIPSEGTVTVPYVVALVKNAPHQAEAKKVLDFLLSDQGQAIWAN 283

Query: 230 AYLRPVRASAISKEAEARFLPAADYARAKSVDYGKMADVQRQFSERYLAEVK 281
           AYLRPVRASA+SKEAE+RFLPAA+YARAKSVDYGKMA+ QR+F ERYLAEV+
Sbjct: 284 AYLRPVRASAMSKEAESRFLPAAEYARAKSVDYGKMAEAQRKFGERYLAEVR 335


>gi|300309932|ref|YP_003774024.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 358

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 42/46 (91%)

Query: 1   LFCSNDLLALAAMRDLRELGLRVPEDISVMGFDGIPLGEMMSPVLA 46
           LFCSNDLLA++AMRDLR LG++VP DISVMGFDGIP+G +M PVLA
Sbjct: 248 LFCSNDLLAMSAMRDLRALGMKVPNDISVMGFDGIPVGALMEPVLA 293


>gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 371

 Score = 64.7 bits (156), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 12/177 (6%)

Query: 82  KGKPMPRSWQDLLKPEYKGLIGYLDPASAFVGYVGAVAVNQALGGTLDNFTPGINYFKAL 141
           +G P P SW DL KP Y G I   +PAS+  GY+   A  Q +G        G  Y  AL
Sbjct: 172 QGLPKPTSWADLTKPVYAGKIVMPNPASSGTGYLDVSAWLQMMGE-----DKGWAYMDAL 226

Query: 142 QKN--QPIVPKQTSYARLISGEIPILFGYDFDAYRARYKDKANVAFVIPAEGSVTVPYVV 199
            KN  Q          +  +GE PI   +++ A + + K+ A +  ++P+EG        
Sbjct: 227 HKNIGQYTHSGSKPCKQAATGEFPIGIAFEYRAVKTK-KEGAPIDVILPSEGLGWDIEAT 285

Query: 200 SLVKNGPNQANAKKVLDFLLSNEGQAIWANAYLRPVRASAISKEAEARFLPAADYAR 256
           ++VK   +   AKK+ DF  S E  A+    Y +     AI   A+   L +ADY +
Sbjct: 286 AIVKGSKHLEAAKKLADFSASKEAMAL----YEKNFAVVAIPGVAKPDELLSADYEK 338


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 900,833
Number of extensions: 39737
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 3
Length of query: 281
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,222,130
Effective search space: 240759610
Effective search space used: 240759610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)