BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0006.p
         (614 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309930|ref|YP_003774022.1| leucyl-tRNA synthetase [Herbasp...  1122   0.0  

>gi|300309930|ref|YP_003774022.1| leucyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 882

 Score = 1122 bits (2903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/609 (89%), Positives = 572/609 (93%), Gaps = 8/609 (1%)

Query: 1   VPPAQWTYSNIEYMKKQMASMGLAIDWSREMTACSPEYYKWNQWMFLKMLEKGIIYKKTG 60
           VPPAQWTYSNI+YMK QM SMGLAIDWSREMTAC PEYYKWNQWMFLKMLEKGIIYKKTG
Sbjct: 101 VPPAQWTYSNIDYMKSQMQSMGLAIDWSREMTACRPEYYKWNQWMFLKMLEKGIIYKKTG 160

Query: 61  TVNWDPIDQTVLANEQVIDGKGWRSGAVIEKREIPMYYAKITDYAEELLEHVETKLPGWP 120
           TVNWDPIDQTVLANEQVIDG+GWRSGAVIEKREIPMYYAKITDYA+ELLEHVETKLPGWP
Sbjct: 161 TVNWDPIDQTVLANEQVIDGRGWRSGAVIEKREIPMYYAKITDYADELLEHVETKLPGWP 220

Query: 121 ERVRLMQANWIGKSTGVRFAFPHDIK-EDGQLISDGKLWVFTTRADTVMGVTFCAVAPEH 179
           ERVRLMQANWIGKSTGVRFAFPH IK  DGQLI+DGKL+VFTTRADT+MGVTFCAVAPEH
Sbjct: 221 ERVRLMQANWIGKSTGVRFAFPHQIKGADGQLINDGKLFVFTTRADTIMGVTFCAVAPEH 280

Query: 180 ALATFAAKNNPALQDFIAECKKGSVIEADMATMEKKGMPTGLFVTHPLTGAQVEVWVGNY 239
            LAT AA+N+PALQ FIAECK+GSVIEADMATMEKKGMPTGLFVTHPLTG QVEVWVGNY
Sbjct: 281 PLATLAAENDPALQAFIAECKQGSVIEADMATMEKKGMPTGLFVTHPLTGDQVEVWVGNY 340

Query: 240 VLITYGDGAVMGVPAHDERDFAFAKKYNLPIRQVVAVEGKTYSTDAWEEWYADKESGKTT 299
           VLITYGDGAVMGVPAHDERDFAFA+KYNLPI+QV+ VEGKTYST+AWEEWY DKE+GKT 
Sbjct: 341 VLITYGDGAVMGVPAHDERDFAFARKYNLPIKQVIGVEGKTYSTEAWEEWYGDKEAGKTI 400

Query: 300 DSGKYDGLGYQAAVDAIAADLAAKGLGEKKVTFRLRDWGISRQRYWGTPIPIIHCADCGD 359
            SGKYDGLGYQAAVDA+AADLAA+GLGEKKVTFRLRDWGISRQRYWGTPIPIIHC DCGD
Sbjct: 401 HSGKYDGLGYQAAVDAVAADLAAQGLGEKKVTFRLRDWGISRQRYWGTPIPIIHCPDCGD 460

Query: 360 VPVPEKDLPVVLPEDCVPDGSGNPLNKHEK-------XAPKPARRETDTMDTFVDSSWYF 412
           VPVPEKDLPVVLPEDCVPDGSGNPLNKHE+          KPARRETDTMDTFVDSSWY+
Sbjct: 461 VPVPEKDLPVVLPEDCVPDGSGNPLNKHEQFLKVDCPCCGKPARRETDTMDTFVDSSWYY 520

Query: 413 MRYTSPQSDDAMVDSRNDYWMPMDQYIGGIEHAVLHLLYARFWTKVMRDFGLVKFDEPFT 472
           MRYTSP S++AMVDSRNDYWMPMDQYIGGIEHAVLHLLYARFWTKVMRDFGLVKFDEPFT
Sbjct: 521 MRYTSPGSNEAMVDSRNDYWMPMDQYIGGIEHAVLHLLYARFWTKVMRDFGLVKFDEPFT 580

Query: 473 NLLTQGMVLNETYYREDAAGKKTWINPDEVELTHDDKGRPVSAILKADGQPVAIGGTEKM 532
           NLLTQGMVLNETYYREDAAGKKTW NP +V+L+ DDKGRPVSA+LK DGQPV IGGTEKM
Sbjct: 581 NLLTQGMVLNETYYREDAAGKKTWYNPADVDLSFDDKGRPVSAVLKEDGQPVMIGGTEKM 640

Query: 533 SKSKNNGIDPQAQIDQYGADTARLFTMFASPPEQTLEWSGTGVEGANRFLRRVWAFAYNH 592
           SKSKNNGIDPQAQIDQYGADTARLFTMFASPPEQTLEWSG GVEGANRFLRRVWAF YN+
Sbjct: 641 SKSKNNGIDPQAQIDQYGADTARLFTMFASPPEQTLEWSGAGVEGANRFLRRVWAFGYNN 700

Query: 593 AARIEXVWA 601
           AARI    A
Sbjct: 701 AARISAAGA 709


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,096,803
Number of extensions: 93114
Number of successful extensions: 236
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 523
Effective length of database: 1,188,985
Effective search space: 621839155
Effective search space used: 621839155
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)