BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0178.0001.p
         (246 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309927|ref|YP_003774019.1| gamma-glutamyl phosphate reduct...   182   2e-47

>gi|300309927|ref|YP_003774019.1| gamma-glutamyl phosphate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 422

 Score =  182 bits (462), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/96 (90%), Positives = 91/96 (94%), Gaps = 1/96 (1%)

Query: 136 GLPEDAVQVVETTDRAAVGALITMTEYVDVIVPRGGKGLIERLIKESKVPMIKHLDGICH 195
           GLPE AVQVVETTDRAAVGALITM EYVDVIVPRGGKGLIERL+KE+KVPMIKHLDGICH
Sbjct: 173 GLPEQAVQVVETTDRAAVGALITMQEYVDVIVPRGGKGLIERLMKEAKVPMIKHLDGICH 232

Query: 196 VYIDDKADQAKALDVAFNAKCHRYGTCNTMXETILI 231
           VYIDDKAD  KALDVAFNAKCHRYGTCNTM ET+L+
Sbjct: 233 VYIDDKADTRKALDVAFNAKCHRYGTCNTM-ETLLV 267



 Score =  112 bits (279), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/54 (100%), Positives = 54/54 (100%)

Query: 1   VPLGVIGIIYEARPNVTVDAAGLCIKSGNATILRGGSEAIHCNQALAKLVKEGL 54
           VPLGVIGIIYEARPNVTVDAAGLCIKSGNATILRGGSEAIHCNQALAKLVKEGL
Sbjct: 116 VPLGVIGIIYEARPNVTVDAAGLCIKSGNATILRGGSEAIHCNQALAKLVKEGL 169


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 659,963
Number of extensions: 23187
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 246
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,226,865
Effective search space: 199978995
Effective search space used: 199978995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)