BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0177.0008.p
         (80 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311015|ref|YP_003775107.1| anaerobic (selenocysteine-conta...   144   1e-36
gi|300310774|ref|YP_003774866.1| anaerobic formate dehydrogenase...    63   4e-12

>gi|300311015|ref|YP_003775107.1| anaerobic
          (selenocysteine-containing) formate dehydrogenase
          [Herbaspirillum seropedicae SmR1]
          Length = 775

 Score =  144 bits (363), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 63/75 (84%), Positives = 68/75 (90%)

Query: 6  KAKIETYNNPAGGWGALKYVALNLVKEHVADGKGLRTLLSQNQPDGFDCPGCAWPDREHT 65
          K +IE YN PAGGWGALKYVALNLVKEHVADG+GLRTLLSQNQPDGFDCPGCAWPDREHT
Sbjct: 4  KPRIEQYNQPAGGWGALKYVALNLVKEHVADGRGLRTLLSQNQPDGFDCPGCAWPDREHT 63

Query: 66 STFEFCSRAWRALSA 80
          STFEFC    +A++A
Sbjct: 64 STFEFCENGVKAVAA 78


>gi|300310774|ref|YP_003774866.1| anaerobic formate dehydrogenase
          [Herbaspirillum seropedicae SmR1]
          Length = 790

 Score = 63.2 bits (152), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 7  AKIETYNNPAGGWGALKYVALNLVKEHVADGKGLRTLLSQNQPDGFDCPGCAWPDREHTS 66
          A  + YNN AGGWG++K +   L +EHV    G R L+ QN+P+GF C  C+W       
Sbjct: 27 ATFDEYNNAAGGWGSVKALGSILQQEHVI-ASGTRILMHQNKPEGFACVSCSWAKPADPH 85

Query: 67 TFEFCSRAWRA 77
           FEFC    +A
Sbjct: 86 LFEFCENGAKA 96


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 276,420
Number of extensions: 9378
Number of successful extensions: 21
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 2
Length of query: 80
Length of database: 1,619,870
Length adjustment: 51
Effective length of query: 29
Effective length of database: 1,378,385
Effective search space: 39973165
Effective search space used: 39973165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)