BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0177.0007.p (157 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter AT... 164 3e-42 gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel A... 120 7e-29 gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbasp... 114 5e-27 gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel A... 100 7e-23 gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter AT... 96 1e-21 >gi|300310896|ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 335 Score = 164 bits (415), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 80/154 (51%), Positives = 106/154 (68%), Gaps = 4/154 (2%) Query: 1 VEPRFIVADEPVSALDVSIQAQVINLLQDLRQRFNLAMLFISHDLDVVEYICDRVVVLYL 60 V+P+ +V DE V+ALDVSIQAQ++NL DLR L LFISHDL VVE++ DRVV++YL Sbjct: 184 VQPQMLVCDEAVAALDVSIQAQILNLFMDLRAELGLTYLFISHDLGVVEHVSDRVVIMYL 243 Query: 61 GKVMEIAPAAALFERPLHPYSQALLAASPKPESDAREQALLRKPLQGDLPSPANPPSGCV 120 G+V+E AP A LF +P HPY+QALLA P+ + +E ++ G++PSP NPP+GC Sbjct: 244 GRVVESAPVAELFGQPNHPYTQALLAEVPRMGARKKEFTAIK----GEIPSPLNPPTGCH 299 Query: 121 FRTRCPYALELCAATVPQLKEVAPGRWRACLRED 154 F RCP+A + C P L+E+APG AC D Sbjct: 300 FNPRCPHATQRCREEQPLLREIAPGHMSACHLND 333 >gi|300312478|ref|YP_003776570.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 334 Score = 120 bits (300), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 70/162 (43%), Positives = 93/162 (57%), Gaps = 12/162 (7%) Query: 2 EPRFIVADEPVSALDVSIQAQVINLLQDLRQRFNLAMLFISHDLDVVEYICDRVVVLYLG 61 P I+ADEP +ALDV+IQAQ++ ++++L+Q F A++FI+HDL VV I DRV V+Y G Sbjct: 172 NPDLIIADEPTTALDVTIQAQILRMIRELQQEFGAAVIFITHDLGVVSRIADRVAVMYAG 231 Query: 62 KVMEIAPAAALFERPLHPYSQALLAASPKPESDAREQALLRKPLQ---GDLPSPANPPSG 118 +V+E A LF +P HPY+Q LL P R + L LQ G +PS SG Sbjct: 232 QVVETTDVAQLFAQPRHPYTQGLLNCIP-----VRGKTLPGSHLQAIPGVVPSLVGQVSG 286 Query: 119 CVFRTRCPYALELCA---ATVPQLKEVAPGRWRACLREDVLL 157 C FR RC A C V Q AP + R CL+ DV + Sbjct: 287 CAFRNRCAKADSGCERDPQMVQQGSVTAPHQAR-CLKLDVAM 327 >gi|300311168|ref|YP_003775260.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 617 Score = 114 bits (284), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 54/112 (48%), Positives = 79/112 (70%), Gaps = 2/112 (1%) Query: 1 VEPRFIVADEPVSALDVSIQAQVINLLQDLRQRFNLAMLFISHDLDVVEYICDRVVVLYL 60 + P+ ++ADE VSALDVSIQAQ++NL+ DL+ ++ +FISHD+ VVE I RV V+YL Sbjct: 477 LNPKIVIADESVSALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYL 536 Query: 61 GKVMEIAPAAALFERPLHPYSQALLAASPKPESDAREQALLRKPLQGDLPSP 112 G+++EI P A+FE P HPY++ L+AA P + R+ +K L ++PSP Sbjct: 537 GQIVEIGPRRAIFENPQHPYTRKLMAAVPVADPTLRQPG--KKLLTDEIPSP 586 Score = 91.3 bits (225), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 41/89 (46%), Positives = 63/89 (70%) Query: 2 EPRFIVADEPVSALDVSIQAQVINLLQDLRQRFNLAMLFISHDLDVVEYICDRVVVLYLG 61 +P ++ADEP +ALDV+IQAQ++ L++ L+Q + ++FI+HD+ VV + DRVVV+ G Sbjct: 181 KPSLLIADEPTTALDVTIQAQILQLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRG 240 Query: 62 KVMEIAPAAALFERPLHPYSQALLAASPK 90 + +E LF P HPY+Q+LLAA P+ Sbjct: 241 EKVEENAVNPLFAAPAHPYTQSLLAAVPR 269 >gi|300310895|ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 100 bits (248), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 51/131 (38%), Positives = 81/131 (61%), Gaps = 4/131 (3%) Query: 2 EPRFIVADEPVSALDVSIQAQVINLLQDLRQRFNLAMLFISHDLDVVEYICDRVVVLYLG 61 +P I+ADEP +ALDV+IQAQ+++ +Q L ++ A+++I+HDL VV + D V V+Y G Sbjct: 173 KPDLIIADEPTTALDVTIQAQILSEVQKLARQHGTALIWITHDLSVVAGLADEVAVMYAG 232 Query: 62 KVMEIAPAAALFERPLHPYSQALLAASPKPESDAREQALLRKPLQGDLPSPANPPSGCVF 121 +++E A+ + PLHPY+Q L+ + P S+ R A LR+ + G P+ + P C F Sbjct: 233 RIVEQGSVDAVLDAPLHPYTQGLIGSLP---SNNRRGARLRQ-IPGMTPNLLHLPPTCAF 288 Query: 122 RTRCPYALELC 132 RC + C Sbjct: 289 AARCERLSQQC 299 >gi|300312477|ref|YP_003776569.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 280 Score = 96.3 bits (238), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 45/92 (48%), Positives = 63/92 (68%) Query: 1 VEPRFIVADEPVSALDVSIQAQVINLLQDLRQRFNLAMLFISHDLDVVEYICDRVVVLYL 60 + P ++ DEP SALDVS+QAQ++NLL DL+ F L LFISHDL VVE++ DRV V+ Sbjct: 178 LRPDILICDEPTSALDVSVQAQILNLLLDLKAEFGLTYLFISHDLGVVEHLVDRVAVMNQ 237 Query: 61 GKVMEIAPAAALFERPLHPYSQALLAASPKPE 92 G ++E+ LF P H Y++ LLA++ P+ Sbjct: 238 GSIVELQSREQLFSEPQHLYTRMLLASALTPD 269 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.139 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 501,578 Number of extensions: 20100 Number of successful extensions: 230 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 249 Number of HSP's successfully gapped: 16 Length of query: 157 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 79 Effective length of database: 1,250,540 Effective search space: 98792660 Effective search space used: 98792660 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 126 (53.1 bits)