BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0177.0005.p (610 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311016|ref|YP_003775108.1| MocR family transcription regul... 617 e-177 gi|300311074|ref|YP_003775166.1| transcription regulator protein... 268 1e-72 gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 140 2e-34 gi|300311134|ref|YP_003775226.1| transcription regulator protein... 132 1e-31 gi|300312133|ref|YP_003776225.1| transcription regulator protein... 110 3e-25 >gi|300311016|ref|YP_003775108.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 480 Score = 617 bits (1590), Expect = e-177, Method: Compositional matrix adjust. Identities = 297/381 (77%), Positives = 331/381 (86%) Query: 11 PLYKKFADELAASISAGVLQPGERVTSVRVASQQHSLSVTTVVRAYELLESRGIIESHPQ 70 PLYK+FAD+LAASI GVL+PGER+ SVR+ASQQH +SVTTVVRAYELLESRGIIES PQ Sbjct: 5 PLYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQ 64 Query: 71 SGYFVRKTAMPASTPSAVTLLPPSHPATQQPHEVDVSRLVLATLRTIQQDGTIPLGSPYP 130 SGYFVR+ P+ T HPA Q+ EVDVSRLVLATL+TIQQDGT+PLGSPYP Sbjct: 65 SGYFVREQPEAPPKPALRTTSREDHPAWQESTEVDVSRLVLATLKTIQQDGTVPLGSPYP 124 Query: 131 NPALFPSQRIGQYVGRITRNSDSFSVFTDLPPGHPDLLRQIARRYLETGLAVDPEDIIIT 190 NPALFPS R+ QY GRI R++ SVF DLPPGHP+LLRQIARRYLE GL VDPE+I+IT Sbjct: 125 NPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPELLRQIARRYLENGLKVDPEEIVIT 184 Query: 191 VGATEAINLCLQAVAQPGDTIAVETPTFYAMLHAIERMGMRAVEIPTDPLTGMDLDALEE 250 VGATEAINLCLQAVA+PGDTIAVETPTFYAMLHAIER+GMRA+EIPTDP G+D+ ALEE Sbjct: 185 VGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGIDVGALEE 244 Query: 251 VLRTQKISACMVMPNFQNPLGSMMPDANKKRLVDLAHQHDMPLIEDAVYSELFYGAAHPT 310 ++TQ I+ACMVMPNFQNPLG MPD+ K+RLV LA QH MP+IE+AVYSEL+YG AHP+ Sbjct: 245 RMKTQAIAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPVIENAVYSELYYGNAHPS 304 Query: 311 SLKTYDRDGLVLHCSSFSKSLSSAYRVGWAIPGRYRNQVEKLKFLNTLATPTIPQRAIAE 370 SLK YDRDGLVLHCSSFSKSL+SAYR+GWA+PGRYR QVEKLKFLNTLATPT PQRAIAE Sbjct: 305 SLKNYDRDGLVLHCSSFSKSLTSAYRIGWAMPGRYRAQVEKLKFLNTLATPTAPQRAIAE 364 Query: 371 YLTQGGYERHLRRVRRGLLQQ 391 YLTQGGYERHLRRVRR QQ Sbjct: 365 YLTQGGYERHLRRVRRAFAQQ 385 >gi|300311074|ref|YP_003775166.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 268 bits (685), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 152/394 (38%), Positives = 231/394 (58%), Gaps = 7/394 (1%) Query: 1 MPRTPTTPQIPLYKKFADELAASISAGVLQPGERVTSVRVASQQHSLSVTTVVRAYELLE 60 +P P + + PLY++ AD ++I AG L G+R+ SVR +QH +S++T ++ +E Sbjct: 31 LPSAPESGRQPLYRRLADHYQSAIQAGTLVAGDRMPSVRDLMRQHQVSLSTALQTLRHME 90 Query: 61 SRGIIESHPQSGYFVRKTAMPASTPSAVTLLPPSHPATQQPHEVDVSRLVLATLRTIQQD 120 G +E+ P+SGYFVR+ A P P S A V + V + ++Q Sbjct: 91 EGGWLEARPRSGYFVRQPRRSAIRPVQE---PKSLLAIDAGQFVGIHERVSKYI-ALRQA 146 Query: 121 GT--IPLGSPYPNPALFPSQRIGQYVGRITRNSDSFSVFTDLPPGHPDLLRQIARRYLET 178 G I L P L+ + + Q R R G+ + +ARR L Sbjct: 147 GAPHIDLSGMTCAPQLYAVETLKQAAMRALRERPELLTSAMPHNGNATFRQAVARRALNA 206 Query: 179 GLAVDPEDIIITVGATEAINLCLQAVAQPGDTIAVETPTFYAMLHAIERMGMRAVEIPTD 238 G+ +D E++++T G EA+NL ++AVA PGDTIAVE+PT++ +L A+E +GM+A+EIPT Sbjct: 207 GMRIDTEEVVVTHGCIEALNLAMRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTS 266 Query: 239 PLTGMDLDALEEVLRTQ-KISACMVMPNFQNPLGSMMPDANKKRLVDLAHQHDMPLIEDA 297 P TG+ ++ALE +RT I A +V+PN QNPLG +MP+ +K +LV L Q +PLIED Sbjct: 267 PHTGISVEALELAVRTYGNIKAVVVVPNLQNPLGCIMPEDHKDQLVRLCDQLKLPLIEDD 326 Query: 298 VYSELFYGAAHPTSLKTYDRDGLVLHCSSFSKSLSSAYRVGWAIPGRYRNQVEKLKFLNT 357 Y+EL G+ P+SLK+ DR+G V++C+S +K L+ R+GW GR+ +V+ LKF +T Sbjct: 327 AYTELADGSVTPSSLKSRDRNGNVIYCASLNKVLAPGMRLGWMNGGRWHERVKMLKFTHT 386 Query: 358 LATPTIPQRAIAEYLTQGGYERHLRRVRRGLLQQ 391 A Q A+++ Y+RHLRR+R+ L QQ Sbjct: 387 RANEEWTQVTAADFIASPAYDRHLRRLRQMLKQQ 420 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 115/405 (28%), Positives = 193/405 (47%), Gaps = 23/405 (5%) Query: 12 LYKKFADELAASISAGVLQPGERVTSVRVASQQHSLSVTTVVRAYELLESRGIIESHPQS 71 L ++ A+ LA I G L+ GER+ SVR +Q H + +TVV AYE L +RG++++ + Sbjct: 21 LVEQVANGLAGLIETGELRSGERLPSVRQFAQHHDIGSSTVVEAYEQLVARGMLQARRGA 80 Query: 72 GYFVRKTAMPASTPSAVTLLPPSHPATQQPHEVDVSRLVLATLRTIQQDGTIPL--GSPY 129 G+FV A + +PP P +D + L L + D +P+ G + Sbjct: 81 GFFV--AARAGQSGQHAVFVPPE-PV------IDSAWL----LSEMFADERVPIKAGCGW 127 Query: 130 PNPALFPSQRIGQYVGRITRNSDSFSVFTDLPPGHPDLLRQIARRYL-ETGLAVDPEDII 188 + + Q RI R+ + V P G+ LRQ+ ++L L + E ++ Sbjct: 128 LPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAP-LRQLITQFLGHWSLELGIEQVL 186 Query: 189 ITVGATEAINLCLQAVAQPGDTIAVETPTFYAMLHAIERMGMRAVEIPTDPLTGMDLDAL 248 T GAT+A++L ++ + QPGDT+ ++ P + ++ + G+ + +P P G+D D L Sbjct: 187 TTHGATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAGLNVIGVPRTP-GGVDTDVL 245 Query: 249 EEVLRTQKISACMVMPNFQNPLGSMMPDANKKRLVDLAHQHDMPLIEDAVYSELFYGAAH 308 E + RT QNP G+ A R++ A +H ++ED ++ EL G A Sbjct: 246 ETLARTHHPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFREL--GQAT 303 Query: 309 PTSLKTYDRDGLVLHCSSFSKSLSSAYRVGW-AIPGRYRNQVEKLKFLNTLATPTIPQRA 367 L D V++ S+SK+++ + RVG+ A Q+ K + TL I +R Sbjct: 304 DPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINERL 363 Query: 368 IAEYLTQGGYERHLRRVRRGLLQQLXGAGRRLHSVDRA--AAARG 410 + LT+G + RH++ + LL +L V AARG Sbjct: 364 VHNVLTEGHHRRHVQTLNATLLSAQATLNAKLSEVGLTPFTAARG 408 >gi|300311134|ref|YP_003775226.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 500 Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 100/377 (26%), Positives = 178/377 (47%), Gaps = 10/377 (2%) Query: 12 LYKKFADELAASISAGVLQPGERVTSVRVASQQHSLSVTTVVRAYELLESRGIIESHPQS 71 L ++ + A I +L+ G R+ S+R + + +S TVV AY+ L ++G +ES S Sbjct: 40 LVEQIVRGIRARIDDKLLRSGMRMPSIRQFADTNQISRFTVVEAYDRLVAQGYLESRRGS 99 Query: 72 GYFVRKTAMPASTPSAVTLLPPSHPATQQPHEVDVSRLVLATLRTIQQDGTIPLGSPYPN 131 G++V++ A + A + P +DV LV R + +P G P Sbjct: 100 GFYVKERAPLGGSYGAAQAELDTEPG----RGLDVVWLVRNMFRQMPP-AKMPGGGLLP- 153 Query: 132 PALFPSQRIGQYVGRITRNSDSFSVFTDLPPGHPDLLRQIARRYLETGLAVDPEDIIITV 191 P + I + ++R++ + P G L +Q+ + E +A PE I++T Sbjct: 154 PDWLDGELIANALRAVSRDNPQLLLGYGTPQGFLPLRQQLQLKLAELEIAAAPEQIVLTT 213 Query: 192 GATEAINLCLQAVAQPGDTIAVETPTFYAMLHAIERMGMRAVEIPTDPLTGMDLDALEEV 251 G T+ ++ + +PGD I V+ P ++ M + +G + V IP G D+ L E+ Sbjct: 214 GVTQGLDTVARHFLRPGDVIFVDDPAWFLMFGSFAALGAKVVGIPRLG-DGPDIARLREL 272 Query: 252 LRTQKISACMVMPNFQNPLGSMMPDANKKRLVDLAHQHDMPLIEDAVYSELFYGAAH--P 309 K ++ NP + + A +++ +A +HD ++ED +Y ++ G+A Sbjct: 273 AAVHKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFVIVEDDIYCDMHPGSAVQPA 332 Query: 310 TSLKTYDRDGLVLHCSSFSKSLSSAYRVGW-AIPGRYRNQVEKLKFLNTLATPTIPQRAI 368 T + D+ V++ FSK+LS+ RVG+ A + K L+TL T I +R Sbjct: 333 TRIAALDQLQRVIYLGGFSKTLSANLRVGYIATSAELARSLADRKLLSTLTTGEIGERVA 392 Query: 369 AEYLTQGGYERHLRRVR 385 + L++G Y +H RVR Sbjct: 393 YKVLSEGHYRKHAERVR 409 >gi|300312133|ref|YP_003776225.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 491 Score = 110 bits (275), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 102/387 (26%), Positives = 185/387 (47%), Gaps = 26/387 (6%) Query: 14 KKFADELAASISAGV----LQPGERVTSVRVASQQHSLSVTTVVRAYELLESRGIIESHP 69 + D + ++ GV L G+++ S+RV ++ +S TV RAYE L + G + + P Sbjct: 30 RLLVDRIFTAVLEGVRTRRLAHGDKLPSLRVVAESAQVSRDTVARAYEKLVAHGHVYTRP 89 Query: 70 QSGYFVRKTAMPASTPSAVTLLPPSHPATQQPHEVDVSRLVLATLRTIQQDGTIPLGSPY 129 +G+FVR + +A T P+ T R L RT+ G LGS Sbjct: 90 GAGFFVR---VDNQVANAQTQTAPAPLLTNW-------RQRLLDPRTLLHRG---LGSGD 136 Query: 130 PNPALFPSQRIGQYVGRITRNSDSFSVFTDLPPGHPDLLRQIARRYLETGLAVDPEDIII 189 ++ + ++R++ +++ G+ L +Q+ R+ + G+ V P ++ Sbjct: 137 LPAEWINVPQLAAALRAVSRSNINWAAGYGDAQGYLPLRQQLQRKLADIGVDVTPPQVLT 196 Query: 190 TVGATEAINLCLQA-VAQPGDTIAVETPTFYAMLHAIERMGMRAVEIPTDPLTGMDLDAL 248 T+GAT+AINL + + + QPG T+ V+ P + ++ + GM V + D G D+ AL Sbjct: 197 TLGATDAINLIVMSYLRQPGMTVLVDDPGSFLLMERLLASGMHIVGVARDA-DGPDITAL 255 Query: 249 EEVLRTQKISACMVMPNFQNPLGSMMPDANKKRLVDLAHQHDMPLIEDAVYSEL--FYGA 306 + + +P + + +++ LA + + ++ED Y +L + + Sbjct: 256 QNACEQHGPTFYFCQSLLHSPGYTGLSPQRAFQILRLAERFNFTIVEDDTYGDLAPAHRS 315 Query: 307 AHPTSLKTYDRDGLVLHCSSFSKSLSSAYRVGWAIPGRYRNQVEKL---KFLNTLATPTI 363 H T L + D+ VL+ SFSK+L + R G+ I G Q+E L K ++ + ++ Sbjct: 316 PHATRLASLDQLQHVLYVGSFSKTLGAGMRAGF-IAGN-PQQIEWLLLYKLVSRASNGSL 373 Query: 364 PQRAIAEYLTQGGYERHLRRVRRGLLQ 390 +RAI L++GGY RH ++R L Q Sbjct: 374 AERAIYRLLSEGGYRRHCEQLRTRLDQ 400 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,908,045 Number of extensions: 80238 Number of successful extensions: 301 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 292 Number of HSP's successfully gapped: 13 Length of query: 610 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 519 Effective length of database: 1,188,985 Effective search space: 617083215 Effective search space used: 617083215 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)