BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0176.0010.p
         (121 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311569|ref|YP_003775661.1| NAD-dependent aldehyde dehydrog...   160   2e-41
gi|300310772|ref|YP_003774864.1| NAD-dependent aldehyde dehydrog...    73   8e-15
gi|300311221|ref|YP_003775313.1| NAD+ dependent acetaldehyde deh...    65   2e-12
gi|300310471|ref|YP_003774563.1| NAD-dependent betaine aldehyde ...    63   5e-12

>gi|300311569|ref|YP_003775661.1| NAD-dependent aldehyde
          dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 477

 Score =  160 bits (406), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 74/98 (75%), Positives = 83/98 (84%)

Query: 1  MKQHFINNRWTAPSSGESIPVLDPSDGEVFESLARGNAADIDLAVQAARKAYNNVWSRTS 60
          MKQHFI NRW AP+SGESIPVLDPSDG+ F+++ARGNA DID AV+AAR AY   W R S
Sbjct: 1  MKQHFIANRWVAPTSGESIPVLDPSDGQPFDAIARGNATDIDQAVRAARLAYEGAWGRLS 60

Query: 61 AADRSRLLMKLSQKLAEHQEELAQLEARDCGKPFKQAR 98
          AA+RSRLLMKL+ KL +HQEELAQLE RDCGKP KQAR
Sbjct: 61 AAERSRLLMKLAYKLQDHQEELAQLEGRDCGKPMKQAR 98


>gi|300310772|ref|YP_003774864.1| NAD-dependent aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 477

 Score = 72.8 bits (177), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 1/108 (0%)

Query: 3   QHFINNRWTAPSSGESIPVLDPSDGEVFESLARGNAADIDLAVQAARKAYNNVWSRTSAA 62
           Q FIN  WTA +SG +I V++P+  EV   +A  + AD+D A++AA K +   W   SA 
Sbjct: 6   QLFINGEWTASASGRTIDVINPATEEVIGKIAHADRADLDRALEAASKGFET-WRNMSAF 64

Query: 63  DRSRLLMKLSQKLAEHQEELAQLEARDCGKPFKQARXASVRPSANCAW 110
           +RS+++ + +  L E  EE+A+L   + GKP  +A+  ++  +    W
Sbjct: 65  ERSKIMRRAADLLRERAEEVARLMTMEQGKPLAEAKMETLGAADTIDW 112


>gi|300311221|ref|YP_003775313.1| NAD+ dependent acetaldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 506

 Score = 64.7 bits (156), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 4   HFINNRWTAPSSGESIPVLDPSDGEVFESLARGNAADIDLAVQAARKAYNNVWSRTSAAD 63
           +FI  ++  P  GE    + P  G  F  +AR +A D++LA+ AA  A  + W +TS  +
Sbjct: 21  NFIGGKFVPPVKGEYFENISPVIGRAFCEVARSSAEDVELALDAAHAAKKS-WGKTSPTE 79

Query: 64  RSRLLMKLSQKLAEHQEELAQLEARDCGKPFKQARXASV 102
           R+ +L+K++ ++  + E LA  E  D GKP ++   A +
Sbjct: 80  RANMLLKIADRMEANLELLATAETLDNGKPIRETMAADI 118


>gi|300310471|ref|YP_003774563.1| NAD-dependent betaine aldehyde
           dehydrogenase [Herbaspirillum seropedicae SmR1]
          Length = 486

 Score = 63.2 bits (152), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 1   MKQHFINNRWTAPSSGESIPVLDPSDGEVFESLARGNAADIDLAVQAARKAYNNVWSRTS 60
           +   +I+ +W  P   E   V+ P+  E    +A GNAAD+D AVQAAR+A    W+ TS
Sbjct: 15  LDHFYIDGKWQPPQGSERAAVVAPATEERVCEIALGNAADVDQAVQAARRAI-PAWAATS 73

Query: 61  AADRSRLLMKLSQKLAEHQEELAQLEARDCGKPFKQARXASV 102
             +R+ LL ++   L E  E  AQ    + G P   AR A V
Sbjct: 74  PLERAALLGRVHALLLERSELFAQALTLEMGAPISYARTAHV 115


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.124    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 319,320
Number of extensions: 8633
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 8
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 8
Length of query: 121
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 47
Effective length of database: 1,269,480
Effective search space: 59665560
Effective search space used: 59665560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)