BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0176.0008.p
         (168 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310426|ref|YP_003774518.1| gluconate 5-dehydrogenase oxido...    89   2e-19
gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein...    60   1e-10

>gi|300310426|ref|YP_003774518.1| gluconate 5-dehydrogenase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 264

 Score = 89.0 bits (219), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 8/158 (5%)

Query: 1   MAGSGAHVILNGRNAGTLASAVQGLTAQGLSASALAFDVTDKAAVKDAFARIAGEHAGLD 60
           MA +GA ++LNGR+AG LA+    L A+G +    +FD T    VK A  +I  E   + 
Sbjct: 39  MAQAGAAIVLNGRDAGKLAAVAAQLRAEGHTIHESSFDATSSEEVKAAVQKIESEIGPIG 98

Query: 61  VLVNNAGVRNRKPLLDFSDDDIAAMLETNLIAGYTLSREAARLMVPNKRGRLITVTSIA- 119
           +LVNNAG++ R PL +F + D   ++ TNL + +  ++  AR M+P   G++I + S+  
Sbjct: 99  ILVNNAGIQRRNPLEEFKESDWHDLISTNLNSVFFAAQAVARHMIPRGAGKIINICSVQS 158

Query: 120 --GRIAPRASASVDSCVRMLTTLASGFSCGWSAGDFGM 155
             GR       +    V+M T    G +  W  G +G+
Sbjct: 159 ELGRPGIAPYTATKGAVKMFT---KGMAIDW--GKYGI 191


>gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein)
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 256

 Score = 59.7 bits (143), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 59/120 (49%)

Query: 1   MAGSGAHVILNGRNAGTLASAVQGLTAQGLSASALAFDVTDKAAVKDAFARIAGEHAGLD 60
           +A  G  V++   N    +     L A G  A+ L  D+    ++  AFA I  ++   D
Sbjct: 28  LAAKGHTVLVADINLDAASKTADALVAAGHRAAPLQMDLGSPESIAAAFAHIEKDYGRCD 87

Query: 61  VLVNNAGVRNRKPLLDFSDDDIAAMLETNLIAGYTLSREAARLMVPNKRGRLITVTSIAG 120
           VLVNNAGV      LD+  ++    +  N+       + AARLMV  + GR++ ++SI+G
Sbjct: 88  VLVNNAGVARTYSFLDYPLENWLQTMNVNVTGVLLAGQHAARLMVKQQWGRIVNISSISG 147


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.131    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 507,184
Number of extensions: 19080
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 9
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 9
Length of query: 168
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 89
Effective length of database: 1,245,805
Effective search space: 110876645
Effective search space used: 110876645
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)