BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0176.0005.p
         (308 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312020|ref|YP_003776112.1| D-galactose-1-dehydrogenase [He...   438   e-124

>gi|300312020|ref|YP_003776112.1| D-galactose-1-dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 307

 Score =  438 bits (1127), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 208/307 (67%), Positives = 247/307 (80%)

Query: 1   MKPVKLAIVGVGKIVYDQHVPAITHNPGYELVATASRNHSIPGVPSYASIDDMFAARPDI 60
           M  ++LAI GVGKIVYDQH PAI  N  ++LVATASRNHSI GV +Y S+ +M A+   I
Sbjct: 1   MTAIQLAIAGVGKIVYDQHAPAIAGNTDFKLVATASRNHSIDGVTAYKSMAEMLASGTAI 60

Query: 61  EAVSLCMPPQYRYKAAHAALSAGKHVFLEKPPGATLSEVESLKSLAASRGLTLFASWHSR 120
           +A+SLCMPPQYRY+AA  A+ AGKHVFLEKPPGATLSEVESL+ LAA +G+TLFASWHSR
Sbjct: 61  DAISLCMPPQYRYEAAREAIRAGKHVFLEKPPGATLSEVESLRDLAAEQGVTLFASWHSR 120

Query: 121 HAPAVQTLKSHLAKDAPKEMTVIWKEDVRHWHPGQEWIWEAGGLGVFDPGINALSIVTEI 180
           HAPAVQ +K HL + AP+++ VIW+EDVRHWHP QEWIW+ GGLGVFDPGINALSIVTEI
Sbjct: 121 HAPAVQVVKRHLQQHAPRQVKVIWREDVRHWHPDQEWIWQPGGLGVFDPGINALSIVTEI 180

Query: 181 LPWDIFLRSATLEFPANRHSPIAANLHFENAAGIKVNAEFDWRQTGEQTWDILVKTGNSS 240
           LP  +FL+ A LE P+NR +PIAA L F +A G  V A+FDWRQTG QTWDI+++TG++ 
Sbjct: 181 LPQAMFLKQAALEVPSNRQTPIAARLAFTDALGTDVQADFDWRQTGGQTWDIIIETGSTH 240

Query: 241 VRLSKGGSTLQIDGAACALPEEGEYPSLYRHFRDLIAAGASDVDLSPLRHVADAFMLGKR 300
           V L KGG  L IDG    LP EGEYPSLY+HF  LI   ASDVD++PLRHVADAFMLG+ 
Sbjct: 241 VHLKKGGHELWIDGKQSELPVEGEYPSLYQHFCQLIRKHASDVDVAPLRHVADAFMLGEH 300

Query: 301 LVTDPFI 307
           +VTD F+
Sbjct: 301 IVTDAFV 307


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,071,931
Number of extensions: 45458
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,217,395
Effective search space: 271479085
Effective search space used: 271479085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)