BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0176.0003.p
         (361 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmi...   610   e-176
gi|300309933|ref|YP_003774025.1| Fe3+ ABC transporter periplasmi...    72   5e-14

>gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 371

 Score =  610 bits (1573), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 298/364 (81%), Positives = 324/364 (89%), Gaps = 11/364 (3%)

Query: 4   CIDSLFVVLLF----HHKKATMKPTTILKLLASVLGAGALLSA--HAATTLTVYTALEAD 57
           C+   F    F    HH+K     T +  L ASV+GAG L SA  HAATTLTVYTALEAD
Sbjct: 13  CVLDAFSTQPFTDEGHHEK-----TKLFSLFASVIGAGMLFSAQAHAATTLTVYTALEAD 67

Query: 58  QIKAYQAEFEKSNPDIEIKWVRDSTGIVTAKLLAEKANPKADVIWGLAASSLAILDKEGM 117
           QIKAYQA F K+NPDIEIKWVRDSTGIVTAKLLAEKANP+ADVIWGLAA+SLA+LDKEGM
Sbjct: 68  QIKAYQAAFHKANPDIEIKWVRDSTGIVTAKLLAEKANPQADVIWGLAATSLALLDKEGM 127

Query: 118 LTPYAPKNLSNIEAKYRSPANPPAWVGMDVWGSAICFNTVEAQKQGLPKPTSWADLTKPI 177
           L PYAP+ LS I+AKYRS ANPPAWVGMDVW SAICFNTVEAQKQGLPKPTSWADLTKP+
Sbjct: 128 LMPYAPQGLSAIDAKYRSAANPPAWVGMDVWASAICFNTVEAQKQGLPKPTSWADLTKPV 187

Query: 178 YAGKIVMPHPASSGTGYLDVTAWIQMMGEDKAWAYMDALHKNIGQYTHSGSKPCKSAATG 237
           YAGKIVMP+PASSGTGYLDV+AW+QMMGEDK WAYMDALHKNIGQYTHSGSKPCK AATG
Sbjct: 188 YAGKIVMPNPASSGTGYLDVSAWLQMMGEDKGWAYMDALHKNIGQYTHSGSKPCKQAATG 247

Query: 238 EFPIGIAFEYRAVKTKKEGAPIDIILPSEGLGWDLEATAIVKGTKNLDAAKRLADFSASK 297
           EFPIGIAFEYRAVKTKKEGAPID+ILPSEGLGWD+EATAIVKG+K+L+AAK+LADFSASK
Sbjct: 248 EFPIGIAFEYRAVKTKKEGAPIDVILPSEGLGWDIEATAIVKGSKHLEAAKKLADFSASK 307

Query: 298 DAMMQYEKNFAVLAVPGIAKPDPLLPADYEKRLTKNDFAWTSSNRDRILTEWSKRYESKA 357
           +AM  YEKNFAV+A+PG+AKPD LL ADYEKRL KNDF W S+NRDRILTEWSKRYESK+
Sbjct: 308 EAMALYEKNFAVVAIPGVAKPDELLSADYEKRLIKNDFTWASTNRDRILTEWSKRYESKS 367

Query: 358 EKKQ 361
           EKKQ
Sbjct: 368 EKKQ 371


>gi|300309933|ref|YP_003774025.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 107/237 (45%), Gaps = 24/237 (10%)

Query: 74  EIKWVRDSTGIVT-----------AKLLAEKANPKADVIWGLAASSLAILDKEGMLTPYA 122
           +IK +++ TG+             A+L AEKA+P AD  +   +  +   +K+ ++  Y 
Sbjct: 42  QIKAIKEKTGVTVPPDNKNSGQALAQLTAEKASPVADFAYLGVSFGIEAKNKD-LVAAYK 100

Query: 123 PKNLSNIEAKYRSPANPPAWVGMDVWGSAICFNTVEAQKQGLPKPTSWADLTKPIYAGKI 182
           P + ++I    + P     W  +      I  N V+A K G P P SWADL KP Y G I
Sbjct: 101 PAHWNDIPNGLKDPDG--YWFTIHSGTMGIMVN-VDALK-GKPVPKSWADLQKPEYKGLI 156

Query: 183 VMPHPASSGTGYLDVTAWIQMMGE-----DKAWAYMDALHKNIGQYTHSGSKPCKSAATG 237
               PAS+  GY+   A  Q +G        A  Y   L KN  Q             +G
Sbjct: 157 GYLDPASAFVGYVGAVAINQALGGTLDDFSPAIGYFKNLQKN--QPIVPKQTSYARLISG 214

Query: 238 EFPIGIAFEYRAVKTK-KEGAPIDIILPSEGLGWDLEATAIVKGTKNLDAAKRLADF 293
           E PI + +++ A + K K+ A +  ++PSEG        A+VK   +   AK++ DF
Sbjct: 215 EIPILLGYDFDAYRAKYKDHANVAFVIPSEGTVTVPYVVALVKNAPHQAEAKKVLDF 271


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,098,722
Number of extensions: 44574
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 2
Length of query: 361
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 275
Effective length of database: 1,212,660
Effective search space: 333481500
Effective search space used: 333481500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)