BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0175.0007.p (100 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPa... 125 8e-31 gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 94 2e-21 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 90 4e-20 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 89 7e-20 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 89 8e-20 >gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 125 bits (313), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 78/146 (53%), Positives = 86/146 (58%), Gaps = 46/146 (31%) Query: 1 VQENIMLALRHVKQQPKAQALSVSLAALEQVGLGNKADAYPEQLSGGQQQRMAIAXA--- 57 V EN+MLALRHVKQQ KA+A V+LAAL QVGL KA+AYPEQLSGGQQQR+AIA + Sbjct: 119 VLENVMLALRHVKQQDKAEARRVALAALAQVGLDEKANAYPEQLSGGQQQRVAIARSLAM 178 Query: 58 -------------------------------------------SFAKRVADRIIYMHQGT 74 +FAKRVADRIIYMHQG Sbjct: 179 APKVMLFDEVTSALDPQLTGEVLRVMEDLAANGMTMLLVTHEMNFAKRVADRIIYMHQGR 238 Query: 75 VWEVGPGEMLDNPKTPELHAFLNNGL 100 VWEVGPGEMLD+P TPEL AFL L Sbjct: 239 VWEVGPGEMLDHPYTPELQAFLAADL 264 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 94.4 bits (233), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 74/146 (50%), Gaps = 46/146 (31%) Query: 1 VQENIMLALRHVKQQPKAQALSVSLAALEQVGLGNKADAYPEQLSGGQQQRMAIAXA--- 57 V +NI L VK+ P QA +++ L +VGL +KA AYPEQLSGGQQQR+AIA + Sbjct: 97 VLQNITLGPTAVKRMPADQAQTLAQQVLARVGLADKAGAYPEQLSGGQQQRVAIARSLAL 156 Query: 58 -------------------------------------------SFAKRVADRIIYMHQGT 74 +FA+RVAD++I+MHQG Sbjct: 157 QPQLMLFDEVTSALDPELTGEVLKVMEQMASEGMTMILVTHEMAFARRVADQVIFMHQGQ 216 Query: 75 VWEVGPGEMLDNPKTPELHAFLNNGL 100 VWE G E+LD P TPEL +F+ GL Sbjct: 217 VWEQGGPEILDAPVTPELRSFVGTGL 242 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 89.7 bits (221), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 52/147 (35%), Positives = 74/147 (50%), Gaps = 47/147 (31%) Query: 1 VQENIMLALRHVKQQPKAQALSVSLAALEQVGLGNKADAYPEQLSGGQQQRMAIAXA--- 57 V+ NI LAL +K+ QA +++ L+ VGL NK DAYPEQLSGGQ QR+AIA + Sbjct: 98 VERNITLALTTIKKMSTEQAKTIAHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAM 157 Query: 58 -------------------------------------------SFAKRVADRIIYMHQGT 74 +FA+++AD +++MHQG Sbjct: 158 APELMLFDEVTSALDPELTAEVLKVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQ 217 Query: 75 VWEVG-PGEMLDNPKTPELHAFLNNGL 100 VWE+G P E+ +PKT EL F+++ L Sbjct: 218 VWEIGPPDELFSHPKTAELQKFVSSDL 244 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 89.0 bits (219), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 69/146 (47%), Gaps = 47/146 (32%) Query: 1 VQENIMLALRHVKQQPKAQALSVSLAALEQVGLGNKADAYPEQLSGGQQQRMAIAXA--- 57 V+ENIML+ R VK+ A ++ L+QVGL +K DAYPEQLSGGQQQR+AIA + Sbjct: 96 VEENIMLSPRIVKKTATETARETAIKVLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAM 155 Query: 58 -------------------------------------------SFAKRVADRIIYMHQGT 74 FA+RVAD ++MHQG Sbjct: 156 EPQVMLFDEVTSALDPELTAEVLKVMEELARGGMTMLLVTHEMEFARRVADLTVFMHQGK 215 Query: 75 VWEVGPG-EMLDNPKTPELHAFLNNG 99 VWE P E +P+TPE F+ G Sbjct: 216 VWEARPSEEFFADPQTPEARQFIGAG 241 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 88.6 bits (218), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 54/143 (37%), Positives = 72/143 (50%), Gaps = 47/143 (32%) Query: 1 VQENIMLALRHVKQQPKAQALSVSLAALEQVGLGNKADAYPEQLSGGQQQRMAIAXA--- 57 V N+M+A VK +A+A+ + A LE+VGLG+K DAYP+QLSGGQQQR+AIA A Sbjct: 96 VGRNVMIAPMIVKGVSEAEAMKTAKANLEKVGLGHKFDAYPDQLSGGQQQRVAIARALSM 155 Query: 58 -------------------------------------------SFAKRVADRIIYMHQGT 74 FA+ V +R+++MHQG Sbjct: 156 SPQALLCDEITSALDPELVNEVLTVMRGLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGK 215 Query: 75 VWEVG-PGEMLDNPKTPELHAFL 96 V E+G P E+ NPKTPEL F+ Sbjct: 216 VHEIGPPEELFGNPKTPELQQFI 238 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.131 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 317,874 Number of extensions: 11312 Number of successful extensions: 165 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 11 Length of query: 100 Length of database: 1,619,870 Length adjustment: 69 Effective length of query: 31 Effective length of database: 1,293,155 Effective search space: 40087805 Effective search space used: 40087805 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)