BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0175.0005.p (262 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313889|ref|YP_003777981.1| amino acid ABC transporter perm... 366 e-102 gi|300313166|ref|YP_003777258.1| amino acid ABC transporter perm... 230 1e-61 gi|300309585|ref|YP_003773677.1| amino acid ABC transporter perm... 213 1e-56 gi|300310827|ref|YP_003774919.1| amino acid ABC transporter perm... 195 3e-51 gi|300313536|ref|YP_003777628.1| amino acid ABC transporter perm... 186 2e-48 >gi|300313889|ref|YP_003777981.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 366 bits (939), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/218 (81%), Positives = 199/218 (91%) Query: 1 MGFSLNFAPLAPYWPVFLTGAWLTLKMTTVAIVVGVSIGTLIAFLKRGSNRAVSKACSAY 60 M FSL+F+PLAPYWPVFL GAWLTLKMTT+A++VGV+IG +AF K +R +++ CSAY Sbjct: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY 60 Query: 61 IEAVRNTPFLVQIFLLYFGLASLGIHMPTFAAAVLAMIINIAAYAAEIIRAGLESVPKGQ 120 IE VRNTPFLVQIFLLYFGLASLGI MPTFAAAVLAMIINIAAYAAEIIRAGL+SVP+GQ Sbjct: 61 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ 120 Query: 121 IEAAECLGLSRWRIAWHVMLQPSIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 IEAA+CLGLS WRI WHVMLQP+IERVYPALTSQFLLMMQASAMASQISAEELTAIANTV Sbjct: 121 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 Query: 181 QSDTFRSLETYIVVAFMYLALSILVKLLAWGFGEYLFK 218 QSDTFRSLETY+VVA +YL L+ILVKL+A+ GE +FK Sbjct: 181 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIFK 218 >gi|300313166|ref|YP_003777258.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 230 bits (586), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 111/221 (50%), Positives = 155/221 (70%) Query: 1 MGFSLNFAPLAPYWPVFLTGAWLTLKMTTVAIVVGVSIGTLIAFLKRGSNRAVSKACSAY 60 M ++ +F + W L GAWLT++++ ++IV+G ++GTL A + V AY Sbjct: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 Query: 61 IEAVRNTPFLVQIFLLYFGLASLGIHMPTFAAAVLAMIINIAAYAAEIIRAGLESVPKGQ 120 +E +RNTP LVQ+FL++FGLAS+G + AAV+A+ +N+ AY EI+RAG+ S+ GQ Sbjct: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 Query: 121 IEAAECLGLSRWRIAWHVMLQPSIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 IEAAECLG+SR+ + WHV+L P++ERVYP+LTSQF+L+M AS++ SQISAEELTA AN V Sbjct: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 Query: 181 QSDTFRSLETYIVVAFMYLALSILVKLLAWGFGEYLFKRRR 221 QS+TFRS E Y V+A YL LS L + W + F R+R Sbjct: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKR 221 >gi|300309585|ref|YP_003773677.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 213 bits (542), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 109/222 (49%), Positives = 158/222 (71%), Gaps = 2/222 (0%) Query: 1 MGFSLNFAPLAPYWPVFLTGAWLTLKMTTVAIVVGVSIGTLIAFLKRGSNRA-VSKACSA 59 M + +FA +A +WP+ L GAW T++++ +A ++G +G A + RGS + A S Sbjct: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACA-VARGSRHGWLRAAVSG 59 Query: 60 YIEAVRNTPFLVQIFLLYFGLASLGIHMPTFAAAVLAMIINIAAYAAEIIRAGLESVPKG 119 Y+E +RNTP L+Q + L FGL+S+G+ MP A A LA++INI AY+ EI+RAGLES+ G Sbjct: 60 YVELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHG 119 Query: 120 QIEAAECLGLSRWRIAWHVMLQPSIERVYPALTSQFLLMMQASAMASQISAEELTAIANT 179 Q+EAA CLGLS ++ WHV+L P++ERV+PALTSQF+LMM AS++ S + AEEL +AN Sbjct: 120 QLEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANR 179 Query: 180 VQSDTFRSLETYIVVAFMYLALSILVKLLAWGFGEYLFKRRR 221 VQSDTFR+ E ++++ YLAL+ L++ W G+ +F RRR Sbjct: 180 VQSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRR 221 >gi|300310827|ref|YP_003774919.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 231 Score = 195 bits (496), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 95/221 (42%), Positives = 154/221 (69%) Query: 1 MGFSLNFAPLAPYWPVFLTGAWLTLKMTTVAIVVGVSIGTLIAFLKRGSNRAVSKACSAY 60 M + FA + + L GA LT++++ ++++ G+++G A + ++ A ++Y Sbjct: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARLAVTSY 60 Query: 61 IEAVRNTPFLVQIFLLYFGLASLGIHMPTFAAAVLAMIINIAAYAAEIIRAGLESVPKGQ 120 +E +R+TPFLVQ+F+++FGL S+G+ + AA++AM +N+ AY+ EI+RAG+ ++ Q Sbjct: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 Query: 121 IEAAECLGLSRWRIAWHVMLQPSIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 IEAA+ L ++RW++ HV+L P++E+VYPAL SQF LMM AS++ S ISAEELTA AN + Sbjct: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 Query: 181 QSDTFRSLETYIVVAFMYLALSILVKLLAWGFGEYLFKRRR 221 ++TFRS E Y+VV +Y+ L++L +L W G +FKRRR Sbjct: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRR 221 >gi|300313536|ref|YP_003777628.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 223 Score = 186 bits (472), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 90/221 (40%), Positives = 145/221 (65%) Query: 1 MGFSLNFAPLAPYWPVFLTGAWLTLKMTTVAIVVGVSIGTLIAFLKRGSNRAVSKACSAY 60 M + +F Y V + G T+++ + V+GV++G A+ + + S Y Sbjct: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 Query: 61 IEAVRNTPFLVQIFLLYFGLASLGIHMPTFAAAVLAMIINIAAYAAEIIRAGLESVPKGQ 120 +E +RNTPFLVQ+F ++FGL SL IH+ AA++AM+IN+ AY+ EIIRAG++++P+GQ Sbjct: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 Query: 121 IEAAECLGLSRWRIAWHVMLQPSIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 IEAA+ L +SR +I H++L+P++++++PAL+SQ +++M SA+ SQI+ EEL+ AN + Sbjct: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 QSDTFRSLETYIVVAFMYLALSILVKLLAWGFGEYLFKRRR 221 Q FR+ E YIV +YL L+IL++ + G Y RR Sbjct: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARR 221 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 531,616 Number of extensions: 15677 Number of successful extensions: 154 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 142 Number of HSP's successfully gapped: 21 Length of query: 262 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 179 Effective length of database: 1,226,865 Effective search space: 219608835 Effective search space used: 219608835 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)