BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0175.0004.p
         (246 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313890|ref|YP_003777982.1| nucleoside-diphosphate-sugar ep...   345   2e-96

>gi|300313890|ref|YP_003777982.1| nucleoside-diphosphate-sugar
           epimerase [Herbaspirillum seropedicae SmR1]
          Length = 284

 Score =  345 bits (884), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 164/248 (66%), Positives = 193/248 (77%), Gaps = 8/248 (3%)

Query: 1   VLRVSDLGAALGNEAAS--HEEVVACNLADRDAMDKLIAGCDAIVHLGGVSVERPFEEIL 58
           V+RV+DL +A+     +  HEE + C+LADR A+D ++AGC+AI+HLGGVSVERPFEEIL
Sbjct: 41  VVRVADLASAMAAVDPAAAHEEALGCDLADRAAVDAMVAGCEAIIHLGGVSVERPFEEIL 100

Query: 59  EANIKGVFHVYEERERFSPVRAEVQRERAFASSNHVTGFYRQDERIDVRDLRRPDGYYGL 118
           EANIKGVFH+YE   R    R        FASSNHVTGFY QDERID RD++RPDGYYGL
Sbjct: 101 EANIKGVFHIYEAARRHGVKRV------IFASSNHVTGFYGQDERIDARDMKRPDGYYGL 154

Query: 119 SKSYGEDMAQFNYDRYGIETVSIRIGWSFPEPRDRRSLASWLSYDDLTELMRCCLFTPDV 178
           SKSYGEDMAQF +DRYG+ETVSIRIG  FPE  +RR LASW+S DD  +L+R  LF PDV
Sbjct: 155 SKSYGEDMAQFYFDRYGVETVSIRIGSIFPEATNRRMLASWMSMDDFEQLLRRSLFIPDV 214

Query: 179 GHTVVYGMSDNPSTWWDNRYAAHLGFKARDTSEIFRTRIEAQPLPPADDPVRVYQGGIFT 238
           GHT+VYGMS N  TWWDNRYAAHLG+  +D+SEIFR ++EAQP+P  DDPV   QGG FT
Sbjct: 215 GHTIVYGMSANAKTWWDNRYAAHLGYAPKDSSEIFRAKVEAQPMPAPDDPVLTLQGGAFT 274

Query: 239 ATGPFDPV 246
             GPFDP+
Sbjct: 275 TAGPFDPL 282


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 813,119
Number of extensions: 34092
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,226,865
Effective search space: 199978995
Effective search space used: 199978995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)