BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0174.0001.p
         (115 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310310|ref|YP_003774402.1| fosmidomycin resistance protein...   124   1e-30

>gi|300310310|ref|YP_003774402.1| fosmidomycin resistance protein
           [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score =  124 bits (312), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/110 (66%), Positives = 92/110 (83%)

Query: 1   VIWVSILGVAPFTLMLPYANLFWTGVLTVIIGMILASAFSAILVFAQELMPGKVGTVSGL 60
           VIW+SILG APF LMLP+ANLFWT VL+V+IG++++SAFSAI+V+AQEL+PGKVG ++G+
Sbjct: 303 VIWISILGAAPFALMLPHANLFWTAVLSVVIGLVISSAFSAIVVYAQELVPGKVGMIAGV 362

Query: 61  FFGFAFGMGGIGAALLGKLADVTDIFFVYQVCAFLPLIGLLAAFLPKLER 110
           FFG  FG GGIGAALLG LAD+  I +VY +CAFLPL G+L  FLP +  
Sbjct: 363 FFGLMFGFGGIGAALLGHLADLYGIAWVYGLCAFLPLAGILTVFLPDVRE 412


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.333    0.148    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 291,265
Number of extensions: 7654
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,274,215
Effective search space: 53517030
Effective search space used: 53517030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 124 (52.4 bits)