BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0173.0008.p
         (409 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314037|ref|YP_003778129.1| FAD-dependent dehydrogenase [He...   707   0.0  

>gi|300314037|ref|YP_003778129.1| FAD-dependent dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 535

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/390 (85%), Positives = 363/390 (93%)

Query: 11  MLRLTEIQLPLDHPEADLRAAILARLGVADADLLSVSLFRRSYDARKKSAVTLTYAVDVE 70
           MLR++E+ LPL H E  L AAIL RLG+   +LLS +LFRRSYDARKKSA+TL Y +DV 
Sbjct: 1   MLRISELTLPLSHTEDQLHAAILDRLGIQADELLSFTLFRRSYDARKKSAITLNYTIDVA 60

Query: 71  VRDEAAVLARHKGKQNVGPTPDTNYHFVARAPAGLSKRPIVIGTGPCGIFAGLILAEMGF 130
           ++DEAAVLAR+   +NVGPTPDT+YH+V RAPA L KRP+VIG GPCG+FA LILAEMGF
Sbjct: 61  LKDEAAVLARYAKARNVGPTPDTSYHYVTRAPATLKKRPVVIGFGPCGLFAALILAEMGF 120

Query: 131 NPLILERGKTVRERTKDTWGLWRQRELKPESNVQYGEGGAGTFSDGKLYSQVKDPKHYGR 190
           NP+ILERGKTVRERTKDTWGLWRQRELKPESNVQ+GEGGAGTFSDGKLYSQVKDPKHYGR
Sbjct: 121 NPIILERGKTVRERTKDTWGLWRQRELKPESNVQFGEGGAGTFSDGKLYSQVKDPKHYGR 180

Query: 191 KVLTEFVAADAPPEIMYVSKPHIGTFRLVKMVQLMREKIVALGGEFRFEQRVDDIVIEDG 250
           KVL+EFVAADAPPEIMYVSKPHIGTFRLVKM+QLMR+KI  LGGEFRFEQRV+D++IEDG
Sbjct: 181 KVLSEFVAADAPPEIMYVSKPHIGTFRLVKMIQLMRDKIEKLGGEFRFEQRVEDVLIEDG 240

Query: 251 QVRGVTLAGGEHIEADHVVLAIGHSARDTFQMLYDRGVYMEAKPFSIGFRAEHPQSLIDK 310
           ++RG+TLA GE IEADHVVLAIGHSARDTF+MLY+RGVY+EAKPFSIGFRAEHPQSLIDK
Sbjct: 241 KIRGLTLASGEQIEADHVVLAIGHSARDTFEMLYERGVYIEAKPFSIGFRAEHPQSLIDK 300

Query: 311 CRFGPSAGHPILGAADYKLVHHASNGRSVYSFCMCPGGTVVAATSEPERVVTNGMSQYSR 370
           CRFGPSAGHPILGAADYKLVHHASNGRSVYSFCMCPGGTVVAATSEP RVVTNGMSQYSR
Sbjct: 301 CRFGPSAGHPILGAADYKLVHHASNGRSVYSFCMCPGGTVVAATSEPGRVVTNGMSQYSR 360

Query: 371 NERNANSGIVVGISPADYPGHPLAGIAFQR 400
           NERNANSGIVVGISPADYPGHPLAGIAFQR
Sbjct: 361 NERNANSGIVVGISPADYPGHPLAGIAFQR 390


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,356,930
Number of extensions: 59293
Number of successful extensions: 166
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 322
Effective length of database: 1,207,925
Effective search space: 388951850
Effective search space used: 388951850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)