BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0173.0003.p
         (262 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310652|ref|YP_003774744.1| oxidoreductase, molybdopterin-b...   456   e-130
gi|300312355|ref|YP_003776447.1| sulfite oxidase [Herbaspirillum...    77   1e-15

>gi|300310652|ref|YP_003774744.1| oxidoreductase,
           molybdopterin-binding protein [Herbaspirillum
           seropedicae SmR1]
          Length = 258

 Score =  456 bits (1173), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 215/262 (82%), Positives = 236/262 (90%), Gaps = 4/262 (1%)

Query: 1   MSREDDKPPRKPEGIRLTDHRTALVKLERRLFLRSSLKATLSVGALSMLSGCDLQDNDQV 60
           M  +DDK   K E I L DHR ALV+++RRL LRS+L    S+GALSMLSGCDLQDND V
Sbjct: 1   MKDKDDKHAPKTEKILLADHRPALVQVQRRLMLRSAL----SLGALSMLSGCDLQDNDSV 56

Query: 61  DKVLWAMSRWNDRVQAALFRSDKLAPTYAASQITNPFPFNAFYDEVNAPDIDIADWRLEV 120
           DKVLWAMSRWNDRVQA LFRS KLAPTYAASQIT+PFPFNAFYDE NAPDID +DW+LEV
Sbjct: 57  DKVLWAMSRWNDRVQALLFRSHKLAPTYAASQITHPFPFNAFYDEFNAPDIDGSDWKLEV 116

Query: 121 SGMVSDKKPWTIERLRTLPQAAQITRHICIEGWSAIGQWSGIPLRTFLQAIGADMTAKYV 180
           SG+VSDK+ WT+ERLR LPQA QITRHICIEGWSAIGQWSG+PLR FLQA+GAD+TA+YV
Sbjct: 117 SGLVSDKRSWTLERLRALPQAGQITRHICIEGWSAIGQWSGVPLRLFLQAVGADLTARYV 176

Query: 181 GFKCADRYYSSLDMPTALHPQTILALDFGNEALPTSYGFPLKVRVPTKLGFKNPKHVVAL 240
           GFKCADRYYSSLDMPTALHPQTILALDFG EALPT YG+PLKVRVPTKLGFKNPKHVVA+
Sbjct: 177 GFKCADRYYSSLDMPTALHPQTILALDFGKEALPTQYGYPLKVRVPTKLGFKNPKHVVAI 236

Query: 241 YVTNQNPGGYWEDQGYNWFSGV 262
           +V+NQNPGGYWEDQGYNWFSG+
Sbjct: 237 FVSNQNPGGYWEDQGYNWFSGI 258


>gi|300312355|ref|YP_003776447.1| sulfite oxidase [Herbaspirillum
           seropedicae SmR1]
          Length = 322

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 84/193 (43%), Gaps = 31/193 (16%)

Query: 99  FNAFYD--------EVNAPDIDIADWRLEVSGMVSDKKPWTIER---LRTLPQAAQITRH 147
           +N FY+          NA  +  + W +++ G V  KKP+T++     +  P   +I R 
Sbjct: 81  YNNFYEFGTDKADPAKNAGTLKTSPWTIDIEGEV--KKPFTLDLDALTKLAPLEERIYRL 138

Query: 148 ICIEGWSAIGQWSGIPLRTFLQAIGADMTAKYVGF-KCADR--------------YYSSL 192
            C+EGWS +  W G  L   ++       AKYV F   AD+              Y   L
Sbjct: 139 RCVEGWSMVIPWIGYSLSALIKKAEPTGNAKYVEFVTLADKKQMPGLSDPILNWPYREGL 198

Query: 193 DMPTALHPQTILALDFGNEALPTSYGFPLKVRVPTKLGFKNPKHVVALYVTNQNPGGYWE 252
            +  A HP T+L L    E LP   G P+++ VP K GFK+ K +V +      P   W 
Sbjct: 199 RLDEANHPLTLLTLGMYGEVLPNQNGAPVRIIVPWKYGFKSAKSIVKIRFVKDEPKTAWN 258

Query: 253 ---DQGYNWFSGV 262
               Q Y ++S V
Sbjct: 259 LYAPQEYGFYSNV 271


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 870,523
Number of extensions: 35376
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 2
Length of query: 262
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 179
Effective length of database: 1,226,865
Effective search space: 219608835
Effective search space used: 219608835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)