BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0173.0001.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314039|ref|YP_003778131.1| lipoprotein [Herbaspirillum ser...   120   1e-28

>gi|300314039|ref|YP_003778131.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 625

 Score =  120 bits (300), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 81/115 (70%), Gaps = 6/115 (5%)

Query: 2   QSGGLAQAAALPLQAIRGQVSHLPAASLPDLPFVLCGDGYLTGAVNGLISVGASYDRDDH 61
           Q+  L  AAALPL A+RGQV+HLPA   P LPF LCGDGYLT A  GL+ +GA+YDR   
Sbjct: 444 QASALPIAAALPLNAVRGQVTHLPAEGFPRLPFALCGDGYLTRAHGGLVCMGATYDRFQ- 502

Query: 62  DTAVRADSHAGNLDKLRQLLPGVS--SDIDPDTLP---GRVGFRCVSADRLPLVG 111
           D A+R DSHA NL +L+ +LP ++  + + P + P   GRVG RC++ DRLPLVG
Sbjct: 503 DPALRVDSHAENLGRLQHMLPQIATHTHLPPASAPSLQGRVGQRCIAPDRLPLVG 557


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 593,617
Number of extensions: 21008
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)